Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
         (233 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pin...    31   0.50 
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide...    29   2.7  
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ...    29   3.5  
At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am...    28   6.2  
At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pin...    28   6.2  

>At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 2   SGARTQLADSSTSPPLSDSRRLDYSGLKFSYVDGSDDESASLHSELPS-CVYAAARSRLQ 60
           SG   +L   +T PP S+ +    +G+    V  S D + SL   LP     A   + ++
Sbjct: 18  SGRIERLVGETTVPPSSNPQ----NGVVSKDVVYSPDNNLSLRIYLPEKAATAETEASVK 73

Query: 61  LPLAAYVHQHTRQLHPVFFVTYKDSLLEAAAEPDYQCGGSPYR 103
           LPL  Y H     +   F  TY   L  A +  D       YR
Sbjct: 74  LPLLVYFHGGGFLVETAFSPTYHTFLTAAVSASDCVAVSVDYR 116


>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
           identical to RNA-dependent RNA polymerase [Arabidopsis
           thaliana] gi|8248473|gb|AAF74208
          Length = 1196

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 165 VLDA-DYDPLTYVEKCLRGEIKADRAHWNT---SDLTARLSWINWENLGVNPQRRS 216
           +L+A D   L ++  CL    K DR H N    SDL   L ++ W+   + P R+S
Sbjct: 829 ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKS 884


>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 444

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 68  HQHTRQLHP-VFFVTYKDSLLEAAAEPDYQCGGSPYRVQRAAANVRERRRMLRSGPNCSI 126
           HQHT  L P   F+T     L  A+ P Y C    + V     N+    R+ R     S 
Sbjct: 20  HQHTLALFPRQAFLTCNVCALADASSPIYMCPPCDFVVHLRCINLPRVIRISRHPHRISF 79

Query: 127 NSAFDE 132
              FD+
Sbjct: 80  TPLFDQ 85


>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
           aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
           nearly identical to SP|P98204 Phospholipid-transporting
           ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1158

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 7/40 (17%), Positives = 23/40 (57%)

Query: 58  RLQLPLAAYVHQHTRQLHPVFFVTYKDSLLEAAAEPDYQC 97
           ++ +P++ Y+     ++   +F+T  D + + +++  +QC
Sbjct: 400 QIMIPISLYISMELVRIGQAYFMTNDDQMYDESSDSSFQC 439


>At3g48690.1 68416.m05317 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 324

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 2   SGARTQLADSSTSPPLSDSRRLDYSGLKFSYVDGSDDESASLHSELPSCVYAAARSRLQL 61
           SG   +L   +T PP S+ +    +G+    V  S D + S+   LP    AAA +  +L
Sbjct: 18  SGRIERLMGEATVPPSSEPQ----NGVVSKDVVYSADNNLSVRIYLPE--KAAAETDSKL 71

Query: 62  PLAAYVHQHTRQLHPVFFVTYKDSLLEAAAEPDYQCGGSPYR 103
           PL  Y H     +   F  TY   L  + +  +       YR
Sbjct: 72  PLLVYFHGGGFIIETAFSPTYHTFLTTSVSASNCVAVSVDYR 113


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,234,175
Number of Sequences: 28952
Number of extensions: 191470
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 5
length of query: 233
length of database: 12,070,560
effective HSP length: 79
effective length of query: 154
effective length of database: 9,783,352
effective search space: 1506636208
effective search space used: 1506636208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)