GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
         (233 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           38   5e-05
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    38   7e-05
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           36   2e-04
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           32   0.003
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           27   0.12 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   0.50 
AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash pro...    22   3.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.2  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.2  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 108 AANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
           AAN RERRRM       S+N AFD LR  VP+   +++LSK +T
Sbjct: 1   AANARERRRMN------SLNDAFDRLRDVVPSLGNDRKLSKFET 38


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
           QR  ANVRER+R        S+N AF  LR  +PT P +K LSKI T
Sbjct: 97  QRVMANVRERQRTQ------SLNEAFASLRKSIPTMPSDK-LSKIQT 136


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 108 AANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
           AAN RERRRM  +G    +N AFD LR  +P+   + +LSK +T
Sbjct: 1   AANARERRRM--NG----LNEAFDRLRQVIPSLDADHKLSKFET 38


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 7/41 (17%)

Query: 109 ANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKI 149
           ANVRER+R        S+N AF  LR  +PT P +K LSKI
Sbjct: 1   ANVRERQRTQ------SLNEAFASLRKSIPTMPSDK-LSKI 34


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 100 SPYRVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTF 140
           +P  V  A  N RER R+ +      +N+ F  LR H+P F
Sbjct: 48  APQPVAVARRNARERNRVKQ------VNNGFANLRQHIPNF 82


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 185 KADRAHWNTSDLTARLSWINWENLGVNPQRRSVLTSLAL 223
           KA  AH N+++  A L+W++   +  NP     L   AL
Sbjct: 584 KAAFAHLNSNEARATLNWVSKLIIRSNPSLEEKLQIFAL 622


>AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash
           protein protein.
          Length = 40

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 126 INSAFDELRVHVPTF 140
           +N+ F  LR H+P F
Sbjct: 8   VNNGFANLRQHIPNF 22


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 191 WNTSDLTARLSWINWENLGVNPQRRSV 217
           W   +L A  S  +W   G +PQ+ ++
Sbjct: 226 WQRDNLNANSSITHWILSGADPQKLAI 252


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 33  VDGSDDESASLHSELPSCVYAA-ARSRLQLP 62
           V GS +ES  L    P C Y    +SR + P
Sbjct: 391 VGGSQEESRVLDLSKPGCSYTGEQKSRRKGP 421


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 95  YQCGGSPYRVQRAAANVRERRRMLR 119
           +QC G   R+QR  A +   RR LR
Sbjct: 174 WQCQGGYPRLQRCPAMLVFDRRSLR 198


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,944
Number of Sequences: 317
Number of extensions: 1879
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 233
length of database: 114,650
effective HSP length: 55
effective length of query: 178
effective length of database: 97,215
effective search space: 17304270
effective search space used: 17304270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)