GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   1.8  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    26   4.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   5.4  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   9.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.4  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   9.4  

>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 36 SDDESASLHSELPSCVYAAARSRLQLPLAAY 66
          SDD S+S    L S  YA +R+RL+L  +++
Sbjct: 49 SDDSSSSSSHRLSSVSYAKSRTRLELTSSSH 79


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 180 LRGEIKA-DRAHWNTSDLTARLSWINWENLGVNPQRRSVLTSLALSSDNL 228
           LR  I+  D A W            NW  + ++ QR  +L ++ L +D L
Sbjct: 168 LRSSIEGLDEAFWEAPQRQLICEQYNWMLINIDNQRPKLLVNMLLFNDRL 217


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 59  LQLPLAAYVHQHT-----RQLHPVFFVTYKDSLLEAAAE-PDY 95
           +Q     YVH  T     + +HPVFFVT     L  A E P Y
Sbjct: 333 VQTYAVGYVHAKTHGAFFQAIHPVFFVTLATPWLGVAGEHPSY 375


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 26 SGLKFSYVDGSDDESASLHSELPSCVYAAARSRLQL 61
          S   FS+V G+  ESA L S   S VYA    R QL
Sbjct: 26 SAPSFSFVSGN--ESADLDSCASSIVYAYCLQRKQL 59


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 12  STSPPLSDSRRLDYSGLKFSYVDGSDDES 40
           S S  L+D R L  SG  + +   SDDES
Sbjct: 322 SRSSSLTDERGLADSGNSYHHFSDSDDES 350


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 171 DPLTYVEKCLRGEIKADRAHWNTSDLTARLSWIN 204
           DPLTYV+ C    +  D   ++ S L    S I+
Sbjct: 140 DPLTYVKSCRARFVSKDTKSFSYSSLANTFSLIS 173


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,625
Number of Sequences: 5004
Number of extensions: 37495
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 6
length of query: 233
length of database: 2,362,478
effective HSP length: 71
effective length of query: 162
effective length of database: 2,007,194
effective search space: 325165428
effective search space used: 325165428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)