GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
         (233 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    26   1.1  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    26   1.1  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   5.8  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 4   ARTQLADSSTSPPLSDSRRLDYSGLKFSYVDGSDDESASLHSEL 47
           AR+  ADSS S    +S  L Y   + +  +G  D+ A+   E+
Sbjct: 58  ARSSNADSSHSSEEEESAGLSYKSKRSAQPEGPRDQGATAELEI 101


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 4   ARTQLADSSTSPPLSDSRRLDYSGLKFSYVDGSDDESASLHSEL 47
           AR+  ADSS S    +S  L Y   + +  +G  D+ A+   E+
Sbjct: 58  ARSSNADSSHSSEEEESAGLSYKSKRSAQPEGPRDQGATAELEI 101


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 51  VYAAARSRLQLPLAAYVHQHTRQL 74
           VY AARS LQ  + A   QH  +L
Sbjct: 313 VYIAARSELQRAIKASKRQHFLKL 336


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,729
Number of Sequences: 2123
Number of extensions: 8526
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 233
length of database: 516,269
effective HSP length: 62
effective length of query: 171
effective length of database: 384,643
effective search space: 65773953
effective search space used: 65773953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)