Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
(233 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop heli... 98 5e-21
AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like pro... 98 5e-21
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 41 9e-04
U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein. 39 0.004
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 37 0.014
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 36 0.033
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 35 0.043
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 33 0.18
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 31 0.71
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 31 0.71
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 30 1.6
U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop heli... 28 5.0
U50300-5|AAC48103.2| 337|Caenorhabditis elegans Serpentine rece... 27 8.7
>U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop helix
protein 13 protein.
Length = 147
Score = 97.9 bits (233), Expect = 5e-21
Identities = 53/112 (47%), Positives = 67/112 (59%), Gaps = 12/112 (10%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
+R A++RER+RM CSIN AF ELR ++PTFPYEKRLSKIDT +
Sbjct: 42 ERQTASIRERKRM------CSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDD 95
Query: 165 VLDADYDPLTYVEKCLR----GEIKADRAHWNTSDLTARLSWINWENLGVNP 212
VL D Y++KC+ G+I A W+TSDL ARL+WI W LG+ P
Sbjct: 96 VLRTPEDSGQYIQKCVHMARTGQIGAPA--WSTSDLLARLNWIKWRRLGIEP 145
>AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like
protein.
Length = 147
Score = 97.9 bits (233), Expect = 5e-21
Identities = 53/112 (47%), Positives = 67/112 (59%), Gaps = 12/112 (10%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
+R A++RER+RM CSIN AF ELR ++PTFPYEKRLSKIDT +
Sbjct: 42 ERQTASIRERKRM------CSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDD 95
Query: 165 VLDADYDPLTYVEKCLR----GEIKADRAHWNTSDLTARLSWINWENLGVNP 212
VL D Y++KC+ G+I A W+TSDL ARL+WI W LG+ P
Sbjct: 96 VLRTPEDSGQYIQKCVHMARTGQIGAPA--WSTSDLLARLNWIKWRRLGIEP 145
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 103 RVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXX 162
R++R+AAN RERRRM ++N A+DELR +P K+LSK +T
Sbjct: 71 RMRRSAANERERRRMN------TLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECL 124
Query: 163 XEVLDAD 169
++L D
Sbjct: 125 SQILKQD 131
>U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein.
Length = 71
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 104 VQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXX 163
++R+AAN RERRRM ++N A+DELR +P K+LSK +T
Sbjct: 1 MRRSAANERERRRMN------TLNVAYDELREVLPEIDSGKKLSKFETLQMAQKYIECLS 54
Query: 164 EVLDAD 169
++L D
Sbjct: 55 QILKQD 60
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 104 VQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
V+R AN RERRRM S+N A + LR +P P E +++KI+T
Sbjct: 62 VRRDKANARERRRMN------SLNDALEHLRGILPALPDEPKMTKIET 103
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 100 SPYRVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXX 159
S +V+R AN RER RM +N+A D LR ++P ++LSKI+T
Sbjct: 15 SKRKVRRVKANGRERARMH------GLNNALDMLREYIPITTQHQKLSKIETLRLARNYI 68
Query: 160 XXXXEVLDADYDP 172
+L + P
Sbjct: 69 DALQRMLQTNEQP 81
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 125 SINSAFDELRVHVPTFPYEKRLSKID 150
S N AF +LR +PT P EK+LSKI+
Sbjct: 47 SFNMAFSQLRALLPTLPVEKKLSKIE 72
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 101 PYRVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
PY N RER R+ ++N ++ LR H+P EKR+SK+DT
Sbjct: 170 PYSSSVWKRNERERCRVR------NVNDGYERLRKHLPVHFDEKRISKVDT 214
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
QRA AN RER+R +N AF LR +P+ P +K +SKI T
Sbjct: 21 QRACANRRERQR------TKELNDAFTLLRKLIPSMPSDK-MSKIHT 60
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.71
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
QRA AN RER+R +N AF LR +P+ P +K +SKI T
Sbjct: 21 QRACANRRERQR------TKELNDAFTLLRKLIPSMPSDK-MSKIHT 60
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 98 GGSPYRVQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDT 151
GGS RVQR+ +V E + ++ G C S+ L V+ P L+ IDT
Sbjct: 3 GGSSERVQRSVRSVVETKNNIKYGVICDAGSSGTRLFVYT-LKPLSGGLTNIDT 55
>U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop helix
protein 19 protein.
Length = 111
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 104 VQRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXX 163
+ R AN RER R SI +AF+ LR H+P +++ SK +T
Sbjct: 1 MSRERANARERCRQK------SIGNAFNMLRNHLPKQLRDRKPSKAETLKSAAQYISHLL 54
Query: 164 EVLDADYD 171
+L+ + +
Sbjct: 55 RILEKEIE 62
>U50300-5|AAC48103.2| 337|Caenorhabditis elegans Serpentine
receptor, class t protein18 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 190 HWNTSDLTARLSWINWENLGVNP 212
HW TSD LS+ W N ++P
Sbjct: 11 HWLTSDYKMSLSYFLWNNFQLDP 33
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.130 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,428,604
Number of Sequences: 27539
Number of extensions: 199082
Number of successful extensions: 413
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 13
length of query: 233
length of database: 12,573,161
effective HSP length: 79
effective length of query: 154
effective length of database: 10,397,580
effective search space: 1601227320
effective search space used: 1601227320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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