GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000497-TA|BGIBMGA000497-PA|IPR011598|Helix-loop-helix
DNA-binding, IPR001092|Basic helix-loop-helix dimerisation region bHLH
         (233 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      37   1e-04
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.20 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 105 QRAAANVRERRRMLRSGPNCSINSAFDELRVHVPTFPYEKRLSKIDTXXXXXXXXXXXXE 164
           QR  ANVRER+R        S+N AF  LR  +PT P +K LSKI T            +
Sbjct: 254 QRVMANVRERQRTQ------SLNEAFAALRKIIPTLPSDK-LSKIQTLKLATRYIDFLFQ 306

Query: 165 VLDADYD 171
           VL  + +
Sbjct: 307 VLHCNME 313


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 191 WNTSDLTARLSWINWENLGVNP 212
           W    + A ++W+ W N G+NP
Sbjct: 366 WQEKIVFAAVTWLGWINSGMNP 387


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 196 LTARLSWINWENLGVNP 212
           L   L+W+ W N  +NP
Sbjct: 340 LMPALTWLGWINSAINP 356


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 7   QLADSSTSPPLSDSRRLDY 25
           Q++ +ST+  LSD  R DY
Sbjct: 96  QISPASTAKALSDKTRFDY 114


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 7   QLADSSTSPPLSDSRRLDY 25
           Q++ +ST+  LSD  R DY
Sbjct: 186 QISPASTAKALSDKTRFDY 204


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 174 TYVEKCLRGEIKADRAHWNTSDLTARLSWINWENL 208
           T +   +R ++ +    W+ SD +ARL    W N+
Sbjct: 556 TLIYPIIRRKLGSALGGWHPSDRSARLMLQPWANV 590


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 25  YSGLKFSYVDGSDDESASLHSELPS 49
           Y GL  S+V G  ++    H E PS
Sbjct: 182 YFGLAISFVFGMKEKRKEHHLEGPS 206


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.130    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,607
Number of Sequences: 429
Number of extensions: 2148
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 233
length of database: 140,377
effective HSP length: 56
effective length of query: 177
effective length of database: 116,353
effective search space: 20594481
effective search space used: 20594481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)