Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000496-TA|BGIBMGA000496-PA|IPR000109|TGF-beta receptor,
type I/II extracellular region
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    99   2e-21
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    40   0.001
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    31   0.65 
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    30   1.1  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    29   2.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    29   2.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   3.5  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   6.1  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    27   8.0  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 40/320 (12%)

Query: 2   GKLPYPKAVAFIVTNEFCERFSYYGMRTILSLYLR--------DKLGFTDNDATVIYHVF 53
           G +P+   +  IV  E CERF+YYG+      Y++          L   ++ A  + + F
Sbjct: 79  GTIPWKAFIIIIV--ELCERFAYYGLTVPFQNYMQFGPKDATPGALNLGESGADGLSNFF 136

Query: 54  TMFAYFFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPI--GLPQFELTILA 111
           T + Y  PV  A+IAD +LGR+ TI   +++Y  G ++++ TA+P +          +++
Sbjct: 137 TFWCYVTPVGAALIADQFLGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVS 196

Query: 112 LLLIAFGTGGIKPCVSAFGGDQF-KLPEQAK--------------YLGYYFSLFYFAINA 156
           L++I  GTGGIK  VS    +Q  K+P   K                   + +FY++IN 
Sbjct: 197 LIIIGLGTGGIKSNVSPLMAEQLPKIPPYVKTKKNGSKVIVDPVVTTSRAYMIFYWSINV 256

Query: 157 GSLISTFLTPILRADVHCFGDSDCFSLAFGVPGILMVVSILIFVAGRRLYVIKNPSGNV- 215
           GSL S   T  L +       +  F  A+ +P  + V+ ++I    +R Y    PSG++ 
Sbjct: 257 GSL-SVLATTSLES-------TKGFVYAYLLPLCVFVIPLIILAVSKRFYKHTPPSGSIF 308

Query: 216 --LGKVSTCVGHAVVKSIKNKQKRDHWLDHA--DEKYDKSLIEDIKSLFRVLVLFIPLPV 271
             +G+V            K K      +      +++D   I+++K   R    F+  P+
Sbjct: 309 VRVGQVFFLAAQNKFNLEKTKPSCTTTVGRVTLKDQWDDLFIDELKRALRACKTFLFYPI 368

Query: 272 FWALFDQQGSRWTFQADRME 291
           +W  + Q  +    QA +M+
Sbjct: 369 YWVCYGQMTNNLISQAGQMQ 388



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 493 AVYTINVYEDTDGAYQANPVIITPPNSIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAP 552
           AV    +Y+   G   AN       N I +   IP YV++   E+  S+TGLEF+FT+AP
Sbjct: 448 AVLQAKIYQR--GPCYANFTDTCVSNDISVWIQIPAYVLIAFSEIFASITGLEFAFTKAP 505

Query: 553 ASMKSVLQSVWLLTVAFGNLIVVLI 577
            SMKS++ +++L T AFG ++ + I
Sbjct: 506 PSMKSIITALFLFTNAFGAILSICI 530


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 74  RFRTIFYLSLVYATGSVLISLTAMPPIGLPQFELTILALLLIAFGTGGIKPCVSAFGGDQ 133
           +F   +YLS +    S++   T      +  +   +L  LL+    GG  PC+S +    
Sbjct: 105 KFGPHYYLSAMIIGWSLVTIFTCF----VRHYWSLVLTRLLLGICEGGFFPCLSLYISMT 160

Query: 134 FKLPEQAKYLGYYFSLFYFAINAGSLISTFLTPI 167
           +K  EQ K L Y +    F+   G LI+T LT I
Sbjct: 161 YKREEQGKRLAYLYVCSCFSGAFGGLIATGLTKI 194


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 433 VRFLSNVQTSVTVAIVESKKNKTKLSLQSDDISQVKITKGNG--DVLVNDQKVLEGYAFK 490
           +R   N Q  V +AIV+ ++N ++ S++S      KI K NG   + V+     +  A  
Sbjct: 66  IRLFWNTQGFVRLAIVQLEENVSEKSVRSAAAEAAKILKSNGAKSIAVDGMGFPKDAALG 125

Query: 491 SG-AVYTINVYEDTDGAYQANPVI 513
           +  A Y  ++  D    YQ   V+
Sbjct: 126 AALATYDFSLRRDHLSVYQDEKVV 149


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 6/136 (4%)

Query: 339 NGFDCNFTINTGDFNANNNNIHTIGPLSVYEHLDINADGSIELPYYVRGEGNCSNI---- 394
           N  D N  I     N++ N  H +          +   G+ +    +RG  + +N     
Sbjct: 201 NATDGNIGIAIDAMNSSANPHHFLSVTKQGVVAIVTTTGNPDTHIILRGGKSGTNFDADS 260

Query: 395 VYNGNFYLKE-NTANSFFIN-REGISNFTDNNDKAINGVSVRFLSNVQTSVTVAIVESKK 452
           V      L+E N   S  I+   G S+    N   +       ++N Q ++T  ++ES  
Sbjct: 261 VAGAKAKLEECNKLPSIMIDCSHGNSSKNHKNQPKVAACIAEQVANGQKAITGVMIESHL 320

Query: 453 NKTKLSLQSDDISQVK 468
           N+ K ++  DD+S +K
Sbjct: 321 NEGKQAIPEDDLSSMK 336


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 385 VRGEGNCSNIVYNGNFYLKENTANSFFINR-EGISNFTDNNDKAINGVSVRFLSNVQTSV 443
           V  +GN + ++ NGN  L + TA+   +    G++     NDK +  ++   L N+ + +
Sbjct: 408 VISDGNSTYVIKNGNPLLGQITASGCSLGSVMGVTASICQNDKLLAAITATLLYNIASEL 467

Query: 444 TV 445
            V
Sbjct: 468 AV 469


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 351 DFNANNNNIHTIGPLSVYEHLDINADGSIELPYYVRGEGNCSNIVYNGNFYLKEN 405
           DFN  N NI  I  L+VY+HL  N+DG   + Y +R   +   +++   F L E+
Sbjct: 721 DFNTFNLNIGPIR-LNVYKHL--NSDGHQPIRYMMRETDDEDAVMFVVEFDLLED 772


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 190  ILMVVSILIFVAGRRLYVIKNPSGNVLGKVSTCVG--HAVVKSIKNKQKRDHWL 241
            +L + SIL     +RLY+ KN     +  ++T V    A ++ IKN  +R H+L
Sbjct: 1453 LLSIFSILSITNSQRLYLAKNTEETEVWMLTTMVEALKAFIELIKNLFERLHFL 1506


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 374 NADGSIELPYYVRGEGNCSNIVYNGNFYLKENTANSFFINREGISNFTDNNDKAINGVSV 433
           N++ +   P Y  G G  +N  Y+ N Y   N +NS + +     N+  +N+    G S 
Sbjct: 23  NSNTATNAPSYSVG-GTTANS-YSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASN 80

Query: 434 RFLSN 438
            + SN
Sbjct: 81  TYGSN 85


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 405 NTANSFFINREGISNFTDNND-KAINGVS 432
           N   ++  N E +SN T+NN+ K+ING S
Sbjct: 88  NLLPTYLYNSEDLSNDTENNETKSINGKS 116


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,761
Number of Sequences: 5004
Number of extensions: 128361
Number of successful extensions: 302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 12
length of query: 642
length of database: 2,362,478
effective HSP length: 77
effective length of query: 565
effective length of database: 1,977,170
effective search space: 1117101050
effective search space used: 1117101050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)