Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000496-TA|BGIBMGA000496-PA|IPR000109|TGF-beta receptor,
type I/II extracellular region
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 99 2e-21
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 40 0.001
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 31 0.65
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 30 1.1
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 29 2.0
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 29 2.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 3.5
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 27 6.1
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 27 8.0
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 99.1 bits (236), Expect = 2e-21
Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 40/320 (12%)
Query: 2 GKLPYPKAVAFIVTNEFCERFSYYGMRTILSLYLR--------DKLGFTDNDATVIYHVF 53
G +P+ + IV E CERF+YYG+ Y++ L ++ A + + F
Sbjct: 79 GTIPWKAFIIIIV--ELCERFAYYGLTVPFQNYMQFGPKDATPGALNLGESGADGLSNFF 136
Query: 54 TMFAYFFPVLGAMIADGWLGRFRTIFYLSLVYATGSVLISLTAMPPI--GLPQFELTILA 111
T + Y PV A+IAD +LGR+ TI +++Y G ++++ TA+P + +++
Sbjct: 137 TFWCYVTPVGAALIADQFLGRYNTIVCSAVIYFIGILILTCTAIPSVIDAGKSMGGFVVS 196
Query: 112 LLLIAFGTGGIKPCVSAFGGDQF-KLPEQAK--------------YLGYYFSLFYFAINA 156
L++I GTGGIK VS +Q K+P K + +FY++IN
Sbjct: 197 LIIIGLGTGGIKSNVSPLMAEQLPKIPPYVKTKKNGSKVIVDPVVTTSRAYMIFYWSINV 256
Query: 157 GSLISTFLTPILRADVHCFGDSDCFSLAFGVPGILMVVSILIFVAGRRLYVIKNPSGNV- 215
GSL S T L + + F A+ +P + V+ ++I +R Y PSG++
Sbjct: 257 GSL-SVLATTSLES-------TKGFVYAYLLPLCVFVIPLIILAVSKRFYKHTPPSGSIF 308
Query: 216 --LGKVSTCVGHAVVKSIKNKQKRDHWLDHA--DEKYDKSLIEDIKSLFRVLVLFIPLPV 271
+G+V K K + +++D I+++K R F+ P+
Sbjct: 309 VRVGQVFFLAAQNKFNLEKTKPSCTTTVGRVTLKDQWDDLFIDELKRALRACKTFLFYPI 368
Query: 272 FWALFDQQGSRWTFQADRME 291
+W + Q + QA +M+
Sbjct: 369 YWVCYGQMTNNLISQAGQMQ 388
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 493 AVYTINVYEDTDGAYQANPVIITPPNSIHILWLIPQYVVMTMGEVMFSVTGLEFSFTQAP 552
AV +Y+ G AN N I + IP YV++ E+ S+TGLEF+FT+AP
Sbjct: 448 AVLQAKIYQR--GPCYANFTDTCVSNDISVWIQIPAYVLIAFSEIFASITGLEFAFTKAP 505
Query: 553 ASMKSVLQSVWLLTVAFGNLIVVLI 577
SMKS++ +++L T AFG ++ + I
Sbjct: 506 PSMKSIITALFLFTNAFGAILSICI 530
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 39.5 bits (88), Expect = 0.001
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 74 RFRTIFYLSLVYATGSVLISLTAMPPIGLPQFELTILALLLIAFGTGGIKPCVSAFGGDQ 133
+F +YLS + S++ T + + +L LL+ GG PC+S +
Sbjct: 105 KFGPHYYLSAMIIGWSLVTIFTCF----VRHYWSLVLTRLLLGICEGGFFPCLSLYISMT 160
Query: 134 FKLPEQAKYLGYYFSLFYFAINAGSLISTFLTPI 167
+K EQ K L Y + F+ G LI+T LT I
Sbjct: 161 YKREEQGKRLAYLYVCSCFSGAFGGLIATGLTKI 194
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 30.7 bits (66), Expect = 0.65
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 433 VRFLSNVQTSVTVAIVESKKNKTKLSLQSDDISQVKITKGNG--DVLVNDQKVLEGYAFK 490
+R N Q V +AIV+ ++N ++ S++S KI K NG + V+ + A
Sbjct: 66 IRLFWNTQGFVRLAIVQLEENVSEKSVRSAAAEAAKILKSNGAKSIAVDGMGFPKDAALG 125
Query: 491 SG-AVYTINVYEDTDGAYQANPVI 513
+ A Y ++ D YQ V+
Sbjct: 126 AALATYDFSLRRDHLSVYQDEKVV 149
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 29.9 bits (64), Expect = 1.1
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 339 NGFDCNFTINTGDFNANNNNIHTIGPLSVYEHLDINADGSIELPYYVRGEGNCSNI---- 394
N D N I N++ N H + + G+ + +RG + +N
Sbjct: 201 NATDGNIGIAIDAMNSSANPHHFLSVTKQGVVAIVTTTGNPDTHIILRGGKSGTNFDADS 260
Query: 395 VYNGNFYLKE-NTANSFFIN-REGISNFTDNNDKAINGVSVRFLSNVQTSVTVAIVESKK 452
V L+E N S I+ G S+ N + ++N Q ++T ++ES
Sbjct: 261 VAGAKAKLEECNKLPSIMIDCSHGNSSKNHKNQPKVAACIAEQVANGQKAITGVMIESHL 320
Query: 453 NKTKLSLQSDDISQVK 468
N+ K ++ DD+S +K
Sbjct: 321 NEGKQAIPEDDLSSMK 336
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 385 VRGEGNCSNIVYNGNFYLKENTANSFFINR-EGISNFTDNNDKAINGVSVRFLSNVQTSV 443
V +GN + ++ NGN L + TA+ + G++ NDK + ++ L N+ + +
Sbjct: 408 VISDGNSTYVIKNGNPLLGQITASGCSLGSVMGVTASICQNDKLLAAITATLLYNIASEL 467
Query: 444 TV 445
V
Sbjct: 468 AV 469
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 351 DFNANNNNIHTIGPLSVYEHLDINADGSIELPYYVRGEGNCSNIVYNGNFYLKEN 405
DFN N NI I L+VY+HL N+DG + Y +R + +++ F L E+
Sbjct: 721 DFNTFNLNIGPIR-LNVYKHL--NSDGHQPIRYMMRETDDEDAVMFVVEFDLLED 772
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 190 ILMVVSILIFVAGRRLYVIKNPSGNVLGKVSTCVG--HAVVKSIKNKQKRDHWL 241
+L + SIL +RLY+ KN + ++T V A ++ IKN +R H+L
Sbjct: 1453 LLSIFSILSITNSQRLYLAKNTEETEVWMLTTMVEALKAFIELIKNLFERLHFL 1506
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 374 NADGSIELPYYVRGEGNCSNIVYNGNFYLKENTANSFFINREGISNFTDNNDKAINGVSV 433
N++ + P Y G G +N Y+ N Y N +NS + + N+ +N+ G S
Sbjct: 23 NSNTATNAPSYSVG-GTTANS-YSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYGSYGASN 80
Query: 434 RFLSN 438
+ SN
Sbjct: 81 TYGSN 85
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 405 NTANSFFINREGISNFTDNND-KAINGVS 432
N ++ N E +SN T+NN+ K+ING S
Sbjct: 88 NLLPTYLYNSEDLSNDTENNETKSINGKS 116
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.140 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,761
Number of Sequences: 5004
Number of extensions: 128361
Number of successful extensions: 302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 12
length of query: 642
length of database: 2,362,478
effective HSP length: 77
effective length of query: 565
effective length of database: 1,977,170
effective search space: 1117101050
effective search space used: 1117101050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)
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