GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000496-TA|BGIBMGA000496-PA|IPR000109|TGF-beta receptor,
type I/II extracellular region
         (642 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    28   0.88 
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    26   3.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    26   3.5  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    25   6.2  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   6.2  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 388 EGNCSNIVYNGNFYLKENTANSFFINREGISNF---TDNNDKAINGVSVRFLSNVQTSVT 444
           EG C  +   GN+Y + N          G + F   TD  DK+  GVS   + N     T
Sbjct: 16  EGGCYFVDQKGNYYFQANEDAELTAVDAGQTEFEGLTDEPDKSEEGVSYVLIMNDADKST 75

Query: 445 VAI 447
           + +
Sbjct: 76  LVL 78


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 244 ADEKYDKSLIEDIKSLFRVLVLFIPLPVFWALFDQQGSRWTFQADRMEQDIGSWTLKADQ 303
           ADE +D +   +I        L++P  +F +      + + F     E   GSWT   +Q
Sbjct: 116 ADEGFDGTYHTNIVVKNNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQ 175

Query: 304 MQVL 307
           + ++
Sbjct: 176 LDLI 179


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 244 ADEKYDKSLIEDIKSLFRVLVLFIPLPVFWALFDQQGSRWTFQADRMEQDIGSWTLKADQ 303
           ADE +D +   +I        L++P  +F +      + + F     E   GSWT   +Q
Sbjct: 116 ADEGFDGTYHTNIVVKNNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQ 175

Query: 304 MQVL 307
           + ++
Sbjct: 176 LDLI 179


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 244 ADEKYDKSLIEDIKSLFRVLVLFIPLPVFWALFDQQGSRWTFQADRMEQDIGSWTLKADQ 303
           ADE +D +   ++        L++P  +F +      + + F   R E   GSWT    Q
Sbjct: 99  ADEGFDGTYPTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQ 158

Query: 304 MQV 306
           + +
Sbjct: 159 LDL 161


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 244 ADEKYDKSLIEDIKSLFRVLVLFIPLPVFWALFDQQGSRWTFQADRMEQDIGSWTLKADQ 303
           ADE +D +   ++        L++P  +F +      + + F   R E   GSWT    Q
Sbjct: 131 ADEGFDGTYPTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQ 190

Query: 304 MQV 306
           + +
Sbjct: 191 LDL 193


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.140    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,105
Number of Sequences: 2123
Number of extensions: 27274
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 5
length of query: 642
length of database: 516,269
effective HSP length: 68
effective length of query: 574
effective length of database: 371,905
effective search space: 213473470
effective search space used: 213473470
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)