Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000495-TA|BGIBMGA000495-PA|undefined
         (70 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35282| Best HMM Match : HEAT (HMM E-Value=4.1)                      27   2.8  
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     25   6.4  

>SB_35282| Best HMM Match : HEAT (HMM E-Value=4.1)
          Length = 232

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 7   RPYFILIRKEEEKGDRFARINMEVKHQAID 36
           RPYF+ +++ E +G  FAR    V  +  D
Sbjct: 203 RPYFLRLQEYEREGPFFARAEAAVAFEGAD 232


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 35  IDEQINPFTKKTVYTQTYPTKLIPAAPRKACCFYCS 70
           +DEQ  P          +  K +    RK CC +C+
Sbjct: 544 VDEQCKPLNALNASQVRFVIKKLTKMIRKYCCMHCN 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,109
Number of Sequences: 59808
Number of extensions: 78485
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 2
length of query: 70
length of database: 16,821,457
effective HSP length: 49
effective length of query: 21
effective length of database: 13,890,865
effective search space: 291708165
effective search space used: 291708165
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)