Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000495-TA|BGIBMGA000495-PA|undefined
         (70 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12740.1 68417.m02001 adenine-DNA glycosylase-related / MYH-r...    28   0.87 
At3g54960.1 68416.m06094 thioredoxin family protein similar to p...    25   6.2  
At4g05520.2 68417.m00839 calcium-binding EF hand family protein ...    25   8.1  
At4g05520.1 68417.m00838 calcium-binding EF hand family protein ...    25   8.1  
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    25   8.1  
At1g79680.1 68414.m09293 wall-associated kinase, putative simila...    25   8.1  

>At4g12740.1 68417.m02001 adenine-DNA glycosylase-related /
           MYH-related similar to MYH (GI:18845094) [Rattus
           norvegicus]; similar to adenine-DNA glycosylase
           (GI:12656850) [Mus musculus]; contains TIGRFAM profile
           TIGR01084: A/G-specific adenine glycosylase (hits below
           the trusted cutoff)
          Length = 630

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 45  KTVYTQTYPTKLIPAAPRKACCFYC 69
           +T+    YPTK+I A PR   C  C
Sbjct: 367 RTISVTDYPTKVIKAKPRHDFCCVC 391


>At3g54960.1 68416.m06094 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 579

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 1   MESNDFRPYFILIRKEEEKGDRF 23
           +E+   RP  +L++KEEEK  RF
Sbjct: 268 IETQVKRPALVLLKKEEEKLARF 290


>At4g05520.2 68417.m00839 calcium-binding EF hand family protein
           similar to  EH-domain containing protein 1 from {Mus
           musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
           receptor-mediated endocytosis 1 from [Caenorhabditis
           elegans] GI:13487775, GI:13487777, GI:13487779; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 545

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 16  EEEKGDRFARINMEVKHQAIDEQINPFTKK 45
           E+E+ D  A + M+V  +A D +IN F K+
Sbjct: 414 EKEQNDLLADL-MDVPKKACDRKINEFVKR 442


>At4g05520.1 68417.m00838 calcium-binding EF hand family protein
           similar to  EH-domain containing protein 1 from {Mus
           musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9,
           receptor-mediated endocytosis 1 from [Caenorhabditis
           elegans] GI:13487775, GI:13487777, GI:13487779; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 546

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 16  EEEKGDRFARINMEVKHQAIDEQINPFTKK 45
           E+E+ D  A + M+V  +A D +IN F K+
Sbjct: 415 EKEQNDLLADL-MDVPKKACDRKINEFVKR 443


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MESNDFRPYFILIRKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKL 56
           M+  DF+   +L+  E    DR   +  E + + I  +I P  +  +YT T+P ++
Sbjct: 574 MKMIDFQQVSLLVLDE---ADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV 626


>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
           to wall-associated kinase 2 GI:4826399 from [Arabidopsis
           thaliana]
          Length = 769

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 3   SNDFRPYFILIRKEEEKGDRFARINMEVKH 32
           S D +PY      EEEK +    +N+E ++
Sbjct: 711 SEDMQPYEYASENEEEKKETLVDVNVESRN 740


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,000
Number of Sequences: 28952
Number of extensions: 56181
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 6
length of query: 70
length of database: 12,070,560
effective HSP length: 50
effective length of query: 20
effective length of database: 10,622,960
effective search space: 212459200
effective search space used: 212459200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)