GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000495-TA|BGIBMGA000495-PA|undefined
         (70 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5E7H4 Cluster: Putative uncharacterized protein; n=2; ...    31   3.5  
UniRef50_P17452 Cluster: Dermonecrotic toxin; n=25; Pasteurella ...    31   6.1  
UniRef50_UPI00006CFAD4 Cluster: hypothetical protein TTHERM_0047...    30   8.0  
UniRef50_Q22SS9 Cluster: ATPase, histidine kinase-, DNA gyrase B...    30   8.0  

>UniRef50_Q5E7H4 Cluster: Putative uncharacterized protein; n=2;
           Vibrio|Rep: Putative uncharacterized protein - Vibrio
           fischeri (strain ATCC 700601 / ES114)
          Length = 781

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 7/54 (12%)

Query: 3   SNDFRPYFILIRKEEEKGD--RFARINMEVKH----QAIDEQINPFTKKTVYTQ 50
           + DF PY IL   + E+ D  R+ R+ ME  H    QAI+E++N   ++TV+ Q
Sbjct: 212 NGDF-PYRILGIHDSEESDSYRWLRLKMESNHDVIAQAIEEKLNKNKRRTVHDQ 264


>UniRef50_P17452 Cluster: Dermonecrotic toxin; n=25; Pasteurella
           multocida|Rep: Dermonecrotic toxin - Pasteurella
           multocida
          Length = 1285

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 3   SNDFRPYFILIRKEEEKGDRFARINM-EVKHQAIDEQINPFTKKTVYTQTYPTKLIPAAP 61
           +N+ +P  +L R    K  R   I   E+K   + E INP T KT Y      KL+  +P
Sbjct: 522 NNENQPLVVLRRLGGNKFIRIEPITFQEIKGSLVSEVINPVTNKTYYVSN--AKLLGGSP 579


>UniRef50_UPI00006CFAD4 Cluster: hypothetical protein TTHERM_00470850;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00470850 - Tetrahymena thermophila SB210
          Length = 1507

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 1    MESN-DFRPYFILIRKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTY 52
            M+SN D+ PYF+ I K     DR   INM+  +    +Q N  T K+ + Q Y
Sbjct: 1063 MDSNYDYSPYFLQITK-----DRITFINMQDYYSFPIKQYNITTGKSTFIQQY 1110


>UniRef50_Q22SS9 Cluster: ATPase, histidine kinase-, DNA gyrase B-,
            and HSP90-like domain containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: ATPase, histidine
            kinase-, DNA gyrase B-, and HSP90-like domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1555

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 13   IRKEEEKGDRFA--RINMEVKHQAIDEQINPFTKK 45
            ++ E E+ + F+  ++N++ + Q IDE+INP  KK
Sbjct: 1311 LQNESERANNFSLKQLNLQNQSQQIDEEINPAIKK 1345


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,762,144
Number of Sequences: 1657284
Number of extensions: 2532460
Number of successful extensions: 5695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5695
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 575,637,011
effective HSP length: 49
effective length of query: 21
effective length of database: 494,430,095
effective search space: 10383031995
effective search space used: 10383031995
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)