GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000495-TA|BGIBMGA000495-PA|undefined
         (70 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0791 - 5910380-5911161,5911737-5912158,5912181-5912194           26   3.2  
11_03_0198 - 11527711-11528163                                         25   7.5  
06_01_0132 - 1024099-1024824                                           25   7.5  

>06_01_0791 - 5910380-5911161,5911737-5912158,5912181-5912194
          Length = 405

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 13  IRKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQ 50
           + +E + G+R  + N +    + D+QI P    TVY++
Sbjct: 136 VERERKSGERDQQPNGQAPISSTDKQITPDDSHTVYSK 173


>11_03_0198 - 11527711-11528163
          Length = 150

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 33 QAIDEQINPF--TKKTVYTQTYPTKLIPAAP 61
          QA D+ +N F  T+K  + Q Y  K++P  P
Sbjct: 56 QARDQFLNSFMQTRKGTFVQKYKIKVVPDDP 86


>06_01_0132 - 1024099-1024824
          Length = 241

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 1   MESNDFRPYFILIRKEEEKGDRFARIN 27
           M S D RPYF+ + K     D   R+N
Sbjct: 152 MSSKDLRPYFMDLYKGNTMRDAVLRLN 178


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,073
Number of Sequences: 37544
Number of extensions: 62139
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 14,793,348
effective HSP length: 50
effective length of query: 20
effective length of database: 12,916,148
effective search space: 258322960
effective search space used: 258322960
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)