GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000495-TA|BGIBMGA000495-PA|undefined
         (70 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF175223-1|AAD52614.1| 3469|Drosophila melanogaster SANT domain ...    27   3.2  
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    27   3.2  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    27   3.2  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    27   3.2  
DQ151902-1|AAZ57345.1|  666|Drosophila melanogaster RE33938p pro...    25   9.7  

>AF175223-1|AAD52614.1| 3469|Drosophila melanogaster SANT domain
           protein SMRTER protein.
          Length = 3469

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 6   FRPYFILIRKEEEKGDRFARINMEVKHQAIDEQI 39
           F   F  +RK+ E  +RF R+   +K +A  E+I
Sbjct: 781 FEKVFTELRKQREDKERFNRVGSRIKSEADLEEI 814


>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
           isoform C protein.
          Length = 3604

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 6   FRPYFILIRKEEEKGDRFARINMEVKHQAIDEQI 39
           F   F  +RK+ E  +RF R+   +K +A  E+I
Sbjct: 916 FEKVFTELRKQREDKERFNRVGSRIKSEADLEEI 949


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
           isoform B protein.
          Length = 3604

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 6   FRPYFILIRKEEEKGDRFARINMEVKHQAIDEQI 39
           F   F  +RK+ E  +RF R+   +K +A  E+I
Sbjct: 916 FEKVFTELRKQREDKERFNRVGSRIKSEADLEEI 949


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
           isoform A protein.
          Length = 3604

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 6   FRPYFILIRKEEEKGDRFARINMEVKHQAIDEQI 39
           F   F  +RK+ E  +RF R+   +K +A  E+I
Sbjct: 916 FEKVFTELRKQREDKERFNRVGSRIKSEADLEEI 949


>DQ151902-1|AAZ57345.1|  666|Drosophila melanogaster RE33938p
           protein.
          Length = 666

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 13  IRKEEEKGDRFAR-INMEVKHQAIDEQINPFTKKTVYTQTYP 53
           I  + ++ +R AR I+ ++ H + +   +  TK T+ T+T P
Sbjct: 260 IESQAKRVNRXARSISSKISHNSYNSNSSAATKSTIATKTTP 301


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,177
Number of Sequences: 52641
Number of extensions: 115569
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 24,830,863
effective HSP length: 50
effective length of query: 20
effective length of database: 22,198,813
effective search space: 443976260
effective search space used: 443976260
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)