GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000495-TA|BGIBMGA000495-PA|undefined
         (70 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    25   8.6  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    25   8.6  
Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    25   8.6  
U49830-10|AAL16312.1|  463|Caenorhabditis elegans Hypothetical p...    25   8.6  

>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 14   RKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTK 55
            ++  EK D+ A I    K  A D +     KK V T+  P+K
Sbjct: 1229 QEAREKADQDASIKNAAKKLAADAKTGRGPKKNVCTEVLPSK 1270


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
            K12D12.1 protein.
          Length = 1520

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 14   RKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTK 55
            ++  EK D+ A I    K  A D +     KK V T+  P+K
Sbjct: 1229 QEAREKADQDASIKNAAKKLAADAKTGRGPKKNVCTEVLPSK 1270


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 14  RKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKLIPAAP 61
           R+  ++ +R   ++     +  D+ + P  K+ V  Q  P K  PAAP
Sbjct: 217 RRPMKQREREDTVDESKGEEEEDQGVRPAQKRQVKQQEKPRKQKPAAP 264


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 14  RKEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKLIPAAP 61
           R+  ++ +R   ++     +  D+ + P  K+ V  Q  P K  PAAP
Sbjct: 217 RRPMKQREREDTVDESKGEEEEDQGVRPAQKRQVKQQEKPRKQKPAAP 264


>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 17  EEKGDRFARINMEVKHQAIDEQINPFT 43
           E++ +  A   ++V HQ ++E++N FT
Sbjct: 204 EKEVEAAANEKLDVMHQRLEEEMNDFT 230


>U49830-10|AAL16312.1|  463|Caenorhabditis elegans Hypothetical
          protein C33F10.8 protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 15 KEEEKGDRFARINMEVKHQAIDEQINPFTKKTVYTQTYPTKLIPAA 60
          K++++G R AR N + K+ +  + +   +KK     +   +LIP A
Sbjct: 29 KKKDQGSRKARGNSKKKNHSSKKVVRKTSKKKKNAASPNAQLIPVA 74


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,569
Number of Sequences: 27539
Number of extensions: 63950
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 6
length of query: 70
length of database: 12,573,161
effective HSP length: 50
effective length of query: 20
effective length of database: 11,196,211
effective search space: 223924220
effective search space used: 223924220
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)