Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000494-TA|BGIBMGA000494-PA|undefined
         (1054 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       30   0.072
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   8.3  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 0.072
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 410 QREFNFIDSFFESLQYLENCSLSNKCLSTNKVENLIKNPILYDSDFDIKATEYLELLPKF 469
           +RE+ + + +    + L +C L  K  S+N+       PILYD   D+   ++   LP  
Sbjct: 153 KREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPILYDHIGDLVCVDFYGPLPTG 212

Query: 470 ENGTS 474
             G S
Sbjct: 213 RLGAS 217


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 525 LENKKKHENTDVSTLKKKQRGAL-LKLQH 552
           L+N + H   D  TL  + RGA  LKLQ+
Sbjct: 590 LKNLEIHVTKDTDTLDNEMRGAWPLKLQN 618


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,302
Number of Sequences: 317
Number of extensions: 9165
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 2
length of query: 1054
length of database: 114,650
effective HSP length: 64
effective length of query: 990
effective length of database: 94,362
effective search space: 93418380
effective search space used: 93418380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)