Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
(201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 31 0.12
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 30 0.27
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 29 0.36
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 29 0.47
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 29 0.63
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 28 0.83
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 28 0.83
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.1
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 28 1.1
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 27 1.4
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 5.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 5.8
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 7.7
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 31.1 bits (67), Expect = 0.12
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 31 VFDQPQTNFDIQPNTVIEAENYPGGEPDTNSG-NFISNKLQSSTKFISNK 79
VFDQ T+ + P + + E+ P G SG + IS K +S K +S K
Sbjct: 548 VFDQDDTDLEPVPRLMSKVESIPAGASSDKSGKSSISKKSSNSFKELSPK 597
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 1 MLHSSIMLLLLCVSISTSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTN 60
M+H + C+ + P+DS I+ + +F Q N P+ P TN
Sbjct: 147 MMHRLVQYFAFCIDHFCTGPSDSRIQEKIRLFIQSAHNIAKHPSLYDTEVRNPSAAESTN 206
Query: 61 S------GNFISNKLQSSTKFI 76
S NF S+ ++S+KF+
Sbjct: 207 SHVSLDASNF-SSYAENSSKFL 227
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 29.5 bits (63), Expect = 0.36
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 34 QPQ-TNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKF 75
QPQ D P+ + N PGGEP+ S N S ++ SS+ +
Sbjct: 217 QPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSSAY 259
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 29.1 bits (62), Expect = 0.47
Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 17 TSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGE--PDTNSGNFISNKLQSSTK 74
T P S + P + P T TV E E YP + P T S N +N L+S+
Sbjct: 192 TQLPKTSAVSHQKP-HEAPSTAVKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTAN 250
Query: 75 FISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVK 118
I+N T+ FA + + FG T K
Sbjct: 251 VINN---TRQSTATSPSMFAGNSGNQIGLARVSSSFGRPTSGAK 291
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.7 bits (61), Expect = 0.63
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 30 PVFDQPQTNFDIQPNTVIEAE-NYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALN 88
P+ D Q + D+ I+A+ N + + K+ S+ + I AL
Sbjct: 153 PLLDN-QPSSDLSNFNTIDADYNNASASTSAPATSASLKKVLSAEDSVRETITDIETALQ 211
Query: 89 FGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNV 124
ASRT S +P E + +L+V E IQNV
Sbjct: 212 NMSTSASRTPNDSSPLPYIENRPASSLAVSEKIQNV 247
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 28.3 bits (60), Expect = 0.83
Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 18 SAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFIS 77
+APA P V+L + PQ N + +++ N P G + S + + + +
Sbjct: 520 AAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKSVPPTNMATERGVVG 579
Query: 78 NKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVD 136
+ + A+N + + K +S+KE + ++ KP V+
Sbjct: 580 RRASMSI-AVNARRVSKPEKEHTNPNAEQGDVIPEKPMSIKERMNMLMTKTDYEKPKVE 637
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 28.3 bits (60), Expect = 0.83
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 111 GSKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTGDKFYSAGKVIVGGAEGVSNVVN 170
GS V + ++A I + + + T+S + Y N GD +S + + +G ++N
Sbjct: 245 GSTEYGVAAGLVRILAAIIRDENALLTVSGLDSYSNIGDVCFSMPRKL--NKDGAHRIIN 302
Query: 171 SVL 173
+ L
Sbjct: 303 AKL 305
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 18 SAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYP 53
SAPA S LP + QP +QP+ ++ ++N P
Sbjct: 449 SAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAP 484
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 21 ADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISN-KLQSSTKFISNK 79
A+SP ++LPV + +I PN + ++ P + TN N S + + F SN
Sbjct: 517 ANSPTNLNLPVSSDLDSVLNIPPNEDVFPDSNPVFDEFTNISNLTSPIEASNGNTFGSNP 576
Query: 80 IE--TQVKALN 88
+ Q K++N
Sbjct: 577 VSLPNQQKSVN 587
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 60 NSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTL-ESAVPETEGFGSKTLSVK 118
NS FI+ ++ + + +++ L P A+ ++ E+ + F + T SV
Sbjct: 10 NSSTFITTSMEEKLVPLVPS-DVKLRFLTCPQPGAAVIDSITEATLTAALVFQALTPSVL 68
Query: 119 ENIQNVVAGIFQPKPIVDTISES 141
+ + + + P P+VD I ES
Sbjct: 69 DGVDAIAVACYSPTPLVDMIRES 91
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 5.8
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 20 PADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYP--GGEPDTNSGNFISNKLQSSTKFIS 77
P D P+ ++ P QPQ N++ +N P GG G + S L ++
Sbjct: 362 PNDKPLEMEFPSSSQPQQTVPTN-NSLFLLKNIPSFGGLHHCILGRY-SISLDDFVLWLL 419
Query: 78 NKIETQVKALNFGGPFASRTSTLESAVPE 106
++ + +A+ P + S +E+ + E
Sbjct: 420 DRAQRLQQAVRISHPSTTFCSNVENDIKE 448
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 5.8
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 77 SNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVD 136
S K ET + FG F S+T L + T G L +K N V F KP +
Sbjct: 293 SFKAETTAN-IKFGSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLH 351
Query: 137 TISE 140
I E
Sbjct: 352 LIVE 355
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 51 NYPGGEPDTNSGNFISNKLQS---STKFISNKIETQVKALNF 89
+Y G ++NSGNF +N + + ++ + SN E + NF
Sbjct: 103 SYLQGTAESNSGNFANNSISNNCWNSAYNSNSFEGTGSSPNF 144
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,859
Number of Sequences: 5004
Number of extensions: 36304
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 14
length of query: 201
length of database: 2,362,478
effective HSP length: 69
effective length of query: 132
effective length of database: 2,017,202
effective search space: 266270664
effective search space used: 266270664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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