Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
(201 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21320.1 68416.m02693 hypothetical protein 32 0.31
At1g54200.1 68414.m06178 expressed protein 32 0.31
At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains we... 31 0.40
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 31 0.70
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 31 0.70
At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ... 30 1.2
At2g16640.1 68415.m01910 chloroplast outer membrane protein, put... 29 1.6
At3g10760.1 68416.m01295 myb family transcription factor contain... 29 2.2
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 29 2.8
At1g15780.1 68414.m01893 expressed protein 29 2.8
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related... 28 3.8
At5g63490.1 68418.m07970 CBS domain-containing protein / octicos... 28 5.0
At5g60650.1 68418.m07612 expressed protein ; expression support... 28 5.0
At2g33360.1 68415.m04089 expressed protein 28 5.0
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 27 6.6
At5g40450.1 68418.m04905 expressed protein 27 6.6
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 27 6.6
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 27 8.7
At2g39310.1 68415.m04826 jacalin lectin family protein similar t... 27 8.7
>At3g21320.1 68416.m02693 hypothetical protein
Length = 540
Score = 31.9 bits (69), Expect = 0.31
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 23 SPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFIS-NKIE 81
SPI + + PQ N D+ + PGGE S +S +L+ + S N ++
Sbjct: 137 SPIVIHSEI--DPQANTDLSLQFCTSGSSKPGGEAVVGSKILLSERLEDENQNGSPNVMK 194
Query: 82 TQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIF 129
TQ NF F + T +P E S ++ E++ + A +
Sbjct: 195 TQSYRRNF-AEFNNETQKKPKTLPRREQVASNCSAI-ESLSGISASSY 240
>At1g54200.1 68414.m06178 expressed protein
Length = 366
Score = 31.9 bits (69), Expect = 0.31
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 53 PGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGS 112
PGG T + + +TK + NKI T V + AS T+T SA + S
Sbjct: 172 PGGRLATFLNSIFTGA--GNTKKL-NKINTTVTSTTAAAAAASSTTTCSSASSFSRSCLS 228
Query: 113 KTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTGDKFY 152
KT S E + V F P ++ +S KY N +K Y
Sbjct: 229 KTPSSSEKSKRSVR--FCPVNVIFD-EDSSKYNNKNNKVY 265
>At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains weak
similarity to Sad1/unc-84 protein-like 1
(Swiss-Prot:O94901) [Homo sapiens]
Length = 471
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 66 SNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVV 125
+N +Q + + K+E + K L + S +S + + E S+T S+++++ V
Sbjct: 169 TNSMQVQVELLDKKMEREAKVLR--QEIERKASAFQSELKKIE---SRTESLEKSVDEVN 223
Query: 126 AGIFQPKPIVDTISESEKYGNTGDKFYS 153
A + K ++ I E K GN D +S
Sbjct: 224 AKPWVTKDELERIYEELKKGNVDDSAFS 251
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 30.7 bits (66), Expect = 0.70
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 8 LLLLCVSISTSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISN 67
L+LL + TS+ +P +LP + F ++PNT I E+ G + I
Sbjct: 181 LILLVSLLLTSSSRRNPAGPNLPFGLGSKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVE 240
Query: 68 KLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVV 125
L++ KF + + L G P +T L A+ G +LS E I+ V
Sbjct: 241 FLKTPEKFSALGAKIPKGVLLTGPPGTGKT-LLAKAIAGEAGVPFFSLSGSEFIEMFV 297
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 30.7 bits (66), Expect = 0.70
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 92 PFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTGDKF 151
P S S E VP T+ S +N+Q V+G + V + S +G+ D
Sbjct: 176 PITSPKSA-EPEVPPTDSEKSHVALDNKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDS 234
Query: 152 YSAGKVIVGGAEGVSNVVNSVLEIPGTFIRTIT 184
+ G V + G NVV ++ +++ T T
Sbjct: 235 DALGDVYIWGEVICDNVVKVGIDKNASYLTTRT 267
>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 556
Score = 29.9 bits (64), Expect = 1.2
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 71 SSTKFISNKIETQVKALNFGGPFA-SRTSTLESAVPETEGFGSKTLSVKENIQNVV---A 126
SS +F SN + + L+ G S V GF S V +I ++ A
Sbjct: 28 SSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSA 87
Query: 127 GIFQPKPIVDTISESEKYGNTGDKFYSAGKVIVGGAEGVSNVVNSVLEIPG 177
G+ + V + S+ GN+G + ++ +VGG N+ + L IPG
Sbjct: 88 GLSN-RNSVPGMGISQLLGNSGPRITNSMGNMVGGGNLGRNISSGGLSIPG 137
>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1206
Score = 29.5 bits (63), Expect = 1.6
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 101 ESAVPETEGFGSKTLSVKENIQNVVAG------IFQPKPI-VDTISESEKYGNTGDKFYS 153
E V E EG SK L K+ Q+VV G +F+ + +D+ SE+E+ G TG + S
Sbjct: 254 EEEVVEGEGT-SKNLFEKQTEQDVVEGEGTSKDLFENGSVCMDSESEAERNGETGAAYTS 312
Query: 154 AGKVIVGGAEGVSNVVNSVLEIP 176
IV A G + V ++V P
Sbjct: 313 N---IVTNASGDNEVSSAVTSSP 332
>At3g10760.1 68416.m01295 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 335
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 83 QVKALNFGGP----FASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPI 134
Q+ A +FG P F+S TS + P + GFGS T + K + + Q +PI
Sbjct: 241 QIAAAHFGSPTNGGFSSPTSNGQFGSPTSNGFGSPTTNGKFDPSFLAVRQTQQQPI 296
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 149 DKFYSAGKVIVGGAEGVSNVVNSVLEIPGTFIRTIT 184
D F S+ VIV GA ++V++ L PG F R +T
Sbjct: 461 DGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVT 496
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 53 PGGEPDTNSGNFISNKLQSSTKFISNKI-ETQVKALNFGGP 92
P GEP ++G++ + S + I NKI ET K L F GP
Sbjct: 11 PNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGP 51
>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 414
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 17 TSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTN 60
T+ D ++ L ++D+ ++ + + + +A++ P GEP+TN
Sbjct: 137 TNTDDDEIFKLSLIIWDKNESEY-VSNENIDQAKDVPSGEPETN 179
>At5g63490.1 68418.m07970 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 543
Score = 27.9 bits (59), Expect = 5.0
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 112 SKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTGDKFYSA----------GKVIVGG 161
S+TL+V E +Q +V G F+ P+V+ E + Y A GK I
Sbjct: 134 SETLAV-EALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 191
Query: 162 AEGVSNVVNSVLEIPGTFIRTI 183
EGV + +P TFI T+
Sbjct: 192 VEGVEKSWGTNTSVPNTFIETL 213
>At5g60650.1 68418.m07612 expressed protein ; expression
supported by MPSS
Length = 147
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 5 SIMLLLLCVSISTSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYP 53
S + +LLCVSI+ S P P + F PQ P + + N P
Sbjct: 13 SCLSMLLCVSIAGSRPVHGPAYTNPSAF-SPQAYDFFHPKSSLSDHNNP 60
>At2g33360.1 68415.m04089 expressed protein
Length = 603
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 33 DQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALNFGGP 92
D + + +++ + I+ EN GG SGN +S K Q + ++ Q+ G
Sbjct: 7 DAQKDDLELEDSLNID-ENLSGGNGLLKSGNLLSQKRQQCSLVSNSGKWLQIVKNGPKGS 65
Query: 93 FASRTSTLESAVP 105
F+ TS ++ +P
Sbjct: 66 FSRATSFFDNKIP 78
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 82 TQVKALNFGGPFASRTSTLESAVPETEG-FGSKTLSVKENIQNVVAGIFQPKPIVDT 137
T +K FG A+ + L+S P T K L+ KE N ++ + + K I++T
Sbjct: 449 TVIKECGFGALVANGLAPLKSCGPSTPAVLTQKDLNAKETQNNAISNV-EAKEILET 504
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 48 EAENYPGGEPDT----NSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESA 103
E+E Y G EP+T N+G++ ++ +S + + N + ++ T +E
Sbjct: 762 ESEKYQGNEPETVLVSNTGSYEKSE-KSPSDLVLNVDKEELNDEKINVDQVDGTQIMEEP 820
Query: 104 VPETEGFGSKTLSVKENIQNVVAGIFQPKPI 134
+ + G++ + +NI N I KP+
Sbjct: 821 I-GLDSNGAEAEQIDQNITNETEEILVAKPV 850
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 149 DKFYSAGKVIVGGAEGVSNVVNSVLEIPGTFIRTIT 184
D F S VIV GA ++V++ L PG F R +T
Sbjct: 457 DGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVT 492
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.1 bits (57), Expect = 8.7
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 4 SSIMLLLLCVSISTSAPADSPIRVDLP--VFDQPQTNFDIQPNTVIEAENYPGGEPDTNS 61
+SI+ + S S ++PA SP+R D+P V D+ Q D Q IE E+ E D
Sbjct: 73 TSIVKSSMPSSSSKASPAKSPLRNDMPSTVKDRSQLQKD-QSECKIEHED---SEDDRPL 128
Query: 62 GNFIS-NKLQSSTKFISN 78
+ +S NK +S++ +S+
Sbjct: 129 SSILSGNKGPTSSRQVSS 146
>At2g39310.1 68415.m04826 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 458
Score = 27.1 bits (57), Expect = 8.7
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 63 NFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQ 122
N SN +S KF+++K T N G F LE GF K + + +
Sbjct: 242 NIFSNTAITSLKFLTSKGRTSFFGYNVGKKF-----VLEQKGHRLVGFHGKEDAAIDALG 296
Query: 123 NVVAGIFQPKPIVDTISESEKYGNTG----DKFY-SAGKVIVG-GAEGVSNV 168
+ P P++ + GN G D Y K++VG G +GVS V
Sbjct: 297 AYFGPVPTPTPLIPSKKLPAIGGNEGVTWDDGVYDGVRKILVGQGNDGVSFV 348
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,341,102
Number of Sequences: 28952
Number of extensions: 182694
Number of successful extensions: 394
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 20
length of query: 201
length of database: 12,070,560
effective HSP length: 78
effective length of query: 123
effective length of database: 9,812,304
effective search space: 1206913392
effective search space used: 1206913392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -