GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
         (201 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.9  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.0  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 77  SNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENI 121
           SN   + ++ +N G P +S+T   +SA  + +     TL+VKE++
Sbjct: 130 SNLTVSGLRCVN-GIPVSSKTLASQSAYVQQDDLFIGTLTVKEHL 173


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 77  SNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENI 121
           SN   + ++ +N G P +S+T   +SA  + +     TL+VKE++
Sbjct: 130 SNLTVSGLRCVN-GIPVSSKTLASQSAYVQQDDLFIGTLTVKEHL 173


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 45  TVIEAENYPGGEP 57
           T+I AE  PGG P
Sbjct: 987 TIITAEEVPGGPP 999



 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 79  KIETQVKALNFGGP 92
           KIE QV+ ++FG P
Sbjct: 331 KIEPQVQTIDFGRP 344


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 41 IQPNTVIEAENYPGGEPDT 59
          I P T +EA   P   P+T
Sbjct: 28 ILPETALEAPKSPENHPET 46


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/37 (16%), Positives = 21/37 (56%)

Query: 11  LCVSISTSAPADSPIRVDLPVFDQPQTNFDIQPNTVI 47
           +C++++ + P      + + +++ P+ N +  PN ++
Sbjct: 137 VCLAMTITGPLVIIGNIAMELWNMPRENIEPLPNVIL 173


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,434
Number of Sequences: 317
Number of extensions: 1912
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 114,650
effective HSP length: 54
effective length of query: 147
effective length of database: 97,532
effective search space: 14337204
effective search space used: 14337204
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)