GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    31   0.12 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    30   0.27 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   0.36 
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     29   0.47 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    29   0.63 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    28   0.83 
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    28   0.83 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.1  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    28   1.1  
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom...    27   1.4  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   5.8  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.8  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   7.7  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 31  VFDQPQTNFDIQPNTVIEAENYPGGEPDTNSG-NFISNKLQSSTKFISNK 79
           VFDQ  T+ +  P  + + E+ P G     SG + IS K  +S K +S K
Sbjct: 548 VFDQDDTDLEPVPRLMSKVESIPAGASSDKSGKSSISKKSSNSFKELSPK 597


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 1   MLHSSIMLLLLCVSISTSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTN 60
           M+H  +     C+    + P+DS I+  + +F Q   N    P+        P     TN
Sbjct: 147 MMHRLVQYFAFCIDHFCTGPSDSRIQEKIRLFIQSAHNIAKHPSLYDTEVRNPSAAESTN 206

Query: 61  S------GNFISNKLQSSTKFI 76
           S       NF S+  ++S+KF+
Sbjct: 207 SHVSLDASNF-SSYAENSSKFL 227


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 34  QPQ-TNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKF 75
           QPQ    D  P+    + N PGGEP+  S N  S ++ SS+ +
Sbjct: 217 QPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSSAY 259


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 17  TSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGE--PDTNSGNFISNKLQSSTK 74
           T  P  S +    P  + P T       TV E E YP  +  P T S N  +N L+S+  
Sbjct: 192 TQLPKTSAVSHQKP-HEAPSTAVKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTAN 250

Query: 75  FISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVK 118
            I+N   T+         FA  +         +  FG  T   K
Sbjct: 251 VINN---TRQSTATSPSMFAGNSGNQIGLARVSSSFGRPTSGAK 291


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 30  PVFDQPQTNFDIQPNTVIEAE-NYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALN 88
           P+ D  Q + D+     I+A+ N         + +    K+ S+   +   I     AL 
Sbjct: 153 PLLDN-QPSSDLSNFNTIDADYNNASASTSAPATSASLKKVLSAEDSVRETITDIETALQ 211

Query: 89  FGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNV 124
                ASRT    S +P  E   + +L+V E IQNV
Sbjct: 212 NMSTSASRTPNDSSPLPYIENRPASSLAVSEKIQNV 247


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 18  SAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFIS 77
           +APA  P  V+L   + PQ N      + +++ N P G  +  S +     + +    + 
Sbjct: 520 AAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKSVPPTNMATERGVVG 579

Query: 78  NKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVD 136
            +    + A+N                 + +    K +S+KE +  ++      KP V+
Sbjct: 580 RRASMSI-AVNARRVSKPEKEHTNPNAEQGDVIPEKPMSIKERMNMLMTKTDYEKPKVE 637


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 111 GSKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTGDKFYSAGKVIVGGAEGVSNVVN 170
           GS    V   +  ++A I + +  + T+S  + Y N GD  +S  + +    +G   ++N
Sbjct: 245 GSTEYGVAAGLVRILAAIIRDENALLTVSGLDSYSNIGDVCFSMPRKL--NKDGAHRIIN 302

Query: 171 SVL 173
           + L
Sbjct: 303 AKL 305


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 18  SAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYP 53
           SAPA S     LP + QP     +QP+ ++ ++N P
Sbjct: 449 SAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAP 484


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 21  ADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISN-KLQSSTKFISNK 79
           A+SP  ++LPV     +  +I PN  +  ++ P  +  TN  N  S  +  +   F SN 
Sbjct: 517 ANSPTNLNLPVSSDLDSVLNIPPNEDVFPDSNPVFDEFTNISNLTSPIEASNGNTFGSNP 576

Query: 80  IE--TQVKALN 88
           +    Q K++N
Sbjct: 577 VSLPNQQKSVN 587


>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 60  NSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTL-ESAVPETEGFGSKTLSVK 118
           NS  FI+  ++     +    + +++ L    P A+   ++ E+ +     F + T SV 
Sbjct: 10  NSSTFITTSMEEKLVPLVPS-DVKLRFLTCPQPGAAVIDSITEATLTAALVFQALTPSVL 68

Query: 119 ENIQNVVAGIFQPKPIVDTISES 141
           + +  +    + P P+VD I ES
Sbjct: 69  DGVDAIAVACYSPTPLVDMIRES 91


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 20  PADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYP--GGEPDTNSGNFISNKLQSSTKFIS 77
           P D P+ ++ P   QPQ       N++   +N P  GG      G + S  L     ++ 
Sbjct: 362 PNDKPLEMEFPSSSQPQQTVPTN-NSLFLLKNIPSFGGLHHCILGRY-SISLDDFVLWLL 419

Query: 78  NKIETQVKALNFGGPFASRTSTLESAVPE 106
           ++ +   +A+    P  +  S +E+ + E
Sbjct: 420 DRAQRLQQAVRISHPSTTFCSNVENDIKE 448


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 77  SNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVD 136
           S K ET    + FG  F S+T  L   +  T   G   L +K    N V   F  KP + 
Sbjct: 293 SFKAETTAN-IKFGSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLH 351

Query: 137 TISE 140
            I E
Sbjct: 352 LIVE 355


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 51  NYPGGEPDTNSGNFISNKLQS---STKFISNKIETQVKALNF 89
           +Y  G  ++NSGNF +N + +   ++ + SN  E    + NF
Sbjct: 103 SYLQGTAESNSGNFANNSISNNCWNSAYNSNSFEGTGSSPNF 144


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,859
Number of Sequences: 5004
Number of extensions: 36304
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 14
length of query: 201
length of database: 2,362,478
effective HSP length: 69
effective length of query: 132
effective length of database: 2,017,202
effective search space: 266270664
effective search space used: 266270664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)