GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142...    34   0.068
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874...    31   0.64 
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079...    31   0.84 
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    30   1.5  
02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469...    28   5.9  
11_06_0230 + 21528384-21528908,21529017-21529150,21530109-215301...    27   7.9  

>04_04_1548 -
           34313212-34313304,34313518-34313632,34314097-34314287,
           34314391-34315379,34315989-34316136,34316349-34316424,
           34316946-34317110,34317196-34317286,34318069-34318153,
           34318256-34318411,34318479-34318586,34318713-34318811,
           34318927-34319036,34319139-34319208
          Length = 831

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 27  VDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKA 86
           VDL  F+QP  +   Q       + + G +  +  G+ + N   S    + NKI   V+ 
Sbjct: 570 VDLSRFNQPVASEQQQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQN 629

Query: 87  LNFGGPFASRTSTLESAVPE-----TEGFGSKTLSVKENIQNVVAGIFQPKP-IVDTISE 140
            +   P    +S L + VP      ++G  S   S    +QN + G       ++    E
Sbjct: 630 QSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNAMYGCLDDSSGLLQNTGE 689

Query: 141 SEKYGNTGDKFYSAGKV 157
           ++    T  K Y +G V
Sbjct: 690 NDPATRTFVKVYKSGSV 706


>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
            8746665-8746893,8747314-8747420,8747560-8747622,
            8747883-8747983,8748996-8749090,8749330-8749350,
            8749987-8750082,8750188-8750308,8750415-8750570,
            8750679-8750869,8751207-8751478,8751853-8751954,
            8752006-8752038,8752132-8752308,8752397-8752466,
            8752512-8752585,8752667-8752908,8752983-8753129,
            8753526-8753751,8753893-8753970,8754378-8754521,
            8754829-8755008,8755335-8755394,8755484-8755523,
            8758653-8759137
          Length = 1294

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 47   IEAENYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTS----TLES 102
            ++ E Y    P  + G         ST  +   I +    +N+   F+S+ S    + ++
Sbjct: 981  VDDEEYMNSRPSDDDGRSSGGSSPESTGSVETSISSHFSGMNYPSLFSSKPSGYGASQQT 1040

Query: 103  AVPETEGFGSKTLSVKENIQNVVAG 127
               E   + +  L  +E+ +N +AG
Sbjct: 1041 IREEPPSYSTSVLQKRESFENPLAG 1065


>02_05_0449 -
           29107310-29107377,29107732-29107777,29107860-29107934,
           29108053-29108122,29108313-29108408,29108728-29108914,
           29109001-29109169,29109614-29109646,29109731-29109841,
           29110070-29111256,29112380-29112448,29114417-29114975,
           29115455-29115589,29115714-29115896
          Length = 995

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 89  FGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTG 148
           F GP  S  S+L  AV  TE FG  +L+V   +++         P++  +S S+ +    
Sbjct: 722 FKGPPGSGKSSLCRAVV-TEIFGDSSLNVSHYLKSCSGQGSTSMPVLVPLSSSDHHMELN 780

Query: 149 DKFYS--AGKVIVGGAEGVSN 167
            ++YS  AG V++  A  ++N
Sbjct: 781 LRYYSKNAGYVLMDLANEITN 801


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 89  FGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTG 148
           FG P  +    L S  P+    G   L  KE+I  +V G+F    + D I+E  K+   G
Sbjct: 68  FGVPVHANL-LLYSPQPDMILEGKVELLGKESIHAIVLGVFSAAIMADDINEKFKFKRKG 126

Query: 149 D--KFYS 153
           D  KF S
Sbjct: 127 DGGKFIS 133


>02_05_0623 +
           30446420-30446525,30446635-30446715,30446811-30446987,
           30447629-30447799,30448239-30448448,30448634-30448722,
           30449318-30450010
          Length = 508

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 133 PIVDTISESEKYGNTGDKFYSAGKVIVGGAEGVSNVVNS 171
           P++    ESEK       F S GK+IVG    V+ +V +
Sbjct: 307 PLIPNEDESEKQEVEEGFFTSIGKLIVGAKSSVAEIVGA 345


>11_06_0230 +
           21528384-21528908,21529017-21529150,21530109-21530158,
           21530194-21530726
          Length = 413

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 108 EGFGSKTLSVKENIQNVVAGI 128
           EG  SK L +K NI+NV+ GI
Sbjct: 166 EGEASKKLKMKPNIKNVIKGI 186


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,313,773
Number of Sequences: 37544
Number of extensions: 218336
Number of successful extensions: 410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)