GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     29   3.5  
SB_24511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_759| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.0  

>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 65  ISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNV 124
           ++NKL  + K  S+K+    K +   G F     T+   VP+T+ F +  L  K+N+  V
Sbjct: 107 VANKLGGNIKINSSKMA--FKMMENTGKFLEFCDTI--GVPKTDMFQTVDLYEKQNMPGV 162

Query: 125 VAGI 128
           + GI
Sbjct: 163 INGI 166


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 47   IEAENYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPE 106
            I+AE    G+ + +    ++N  +     + ++ E + +  NFG P  +  S L + +  
Sbjct: 1409 IQAEKSELGKRNWDLEEIVTNLREDLESLVKHRAELEEQLANFGAPLQTNVSHLRTEISS 1468

Query: 107  TEG 109
            + G
Sbjct: 1469 SAG 1471


>SB_24511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 88  NFGGPFASRTSTLESAVPE-TEGFGSKTLS 116
           NFGGPF   +  +E+AVP  +E   SK L+
Sbjct: 16  NFGGPFGGASQKIENAVPGLSETSNSKILN 45


>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 69  LQSSTKFISN-KIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNV 124
           L SST  I N  ++     LN G    S T  +ES    T+ FGS T ++  N QN+
Sbjct: 189 LCSSTSDIGNTNLDIGSNTLNIG----SNTQNIES---NTQNFGSNTQNIGSNTQNI 238


>SB_3615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 51  NYPGGEPDTNSGNFISNKLQSSTKFISNKIET-QVKALNFGG 91
           N PG +P TNS N + +  +   + +S  + T +++ ++F G
Sbjct: 133 NLPGSQPSTNSNNGLFDSGEHVARVLSQAMSTPRIEYMHFDG 174


>SB_759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 42  QPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNKI-ETQVKA------LNFGGPFA 94
           QP+ V  ++NYP         +  ++ L S T  +SN++ + Q KA      +N    FA
Sbjct: 649 QPSDVKSSKNYPRTRDSQADLHLANHTLSSRTAILSNQLKDCQFKAPNSNAEMNIDPEFA 708

Query: 95  SRTSTLES 102
           + T   ES
Sbjct: 709 NSTGNSES 716


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,944,661
Number of Sequences: 59808
Number of extensions: 247978
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)