Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
(201 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55854-1|AAA98010.2| 418|Caenorhabditis elegans Hypothetical pr... 30 0.99
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 3.0
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 3.0
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 5.3
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 27 7.0
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U55854-1|AAA98010.2| 418|Caenorhabditis elegans Hypothetical
protein C04G6.4 protein.
Length = 418
Score = 30.3 bits (65), Expect = 0.99
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 150 KFYSAGKVIVGGAEGVSNVVNSVLEIPGTFIRTITRAA 187
++YS K+++ + ++ +LEIP T + I RAA
Sbjct: 319 RYYSTCKIVLHHESKYFDAISQLLEIPSTLVEVIQRAA 356
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 20 PADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNK 79
PA P V +P++ + Q ++P T + P P + ++T ++N
Sbjct: 114 PASEP--VGIPLYSEKQHQQQLRPTTAVSPPKPPSFAPPVPPAAALITDTSTTTNALTNA 171
Query: 80 IETQVKALNFGGPFASRTSTLESAVPETE-------GFGSKTLSVKENIQNVVAGIFQPK 132
+ Q+K + + S S T+ G G + SV +++++ A P
Sbjct: 172 MFEQLKQSSVRYDYVPYKSDHRSFTQNTQPSPLPPAGVGDRRHSVPDDVRH-YADETTPP 230
Query: 133 PIVDTISE 140
P++ +++
Sbjct: 231 PVLHDVAD 238
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 20 PADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNK 79
PA P V +P++ + Q ++P T + P P + ++T ++N
Sbjct: 336 PASEP--VGIPLYSEKQHQQQLRPTTAVSPPKPPSFAPPVPPAAALITDTSTTTNALTNA 393
Query: 80 IETQVKALNFGGPFASRTSTLESAVPETE-------GFGSKTLSVKENIQNVVAGIFQPK 132
+ Q+K + + S S T+ G G + SV +++++ A P
Sbjct: 394 MFEQLKQSSVRYDYVPYKSDHRSFTQNTQPSPLPPAGVGDRRHSVPDDVRH-YADETTPP 452
Query: 133 PIVDTISE 140
P++ +++
Sbjct: 453 PVLHDVAD 460
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 12 CVSISTSAPADSPIRVDLPVF-DQPQTNFDIQPNTVIEAENYP-GGEPDTNSGNFISNKL 69
C ++ + P + +F D+ + ++ +A++ P G D++S F++ +
Sbjct: 63 CTGVAVNVPWTKLKTCPIQIFIDEINVDVELTNEHKKQAKSNPLGNLGDSSSYGFMNKII 122
Query: 70 QSSTKFISNKIETQVKALNFGGPFASRTSTLESAVP 105
++ + +IS+ +E + FGG F + ++ES P
Sbjct: 123 ENMSLYISS-VEINFDSDVFGGSFMLQRLSVESRSP 157
>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
protein F31B12.2 protein.
Length = 1089
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 58 DTNSGNFISNKLQSSTKFISNKIETQVKAL---NFGGPFASRTSTLESAVPETEGFGSKT 114
DT+SG+ S K SS+ + + +++L G RTS ES +P + S T
Sbjct: 570 DTSSGSNRSKKTNSSSSSVQKHLPKYIQSLFRSRMGTDPCKRTSRSESTLPHRDSNESNT 629
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 59 TNS-GNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSV 117
TNS G+FI NKL S+ F+SN + + GG + + A+ T F + T ++
Sbjct: 969 TNSNGSFIENKLDSTGDFLSNAWNSLTSNNSTGG---GNGTWISGALNSTGRFLTNTWNL 1025
Query: 118 KENIQNVVAGIF 129
N N AG F
Sbjct: 1026 LGNC-NGTAGNF 1036
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 27.5 bits (58), Expect = 7.0
Identities = 22/82 (26%), Positives = 33/82 (40%)
Query: 66 SNKLQSSTKFISNKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVV 125
S K K N+ ET K+ + T ES++ G KT KE++QN+
Sbjct: 473 SRKKPGRPKNSRNRSETTRKSGRLSAIQNNACVTSESSMSNETGDVEKTDDKKESVQNIP 532
Query: 126 AGIFQPKPIVDTISESEKYGNT 147
K VDT ++ +T
Sbjct: 533 EQEAAEKKEVDTTISDKRLSDT 554
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 16 STSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKF 75
+T+ +PI P F +P + N ++ + PG EP +NS N +++L S + +
Sbjct: 451 TTTHHVQTPIITIAPKFSEPSPYAE---NIMLTPKQAPGTEPRSNSQNPQTDRLASQSGY 507
Query: 76 IS 77
S
Sbjct: 508 ES 509
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 142 EKYGNTGDKFYSAGKVIVGGAEGVSNVVNSVLEIPGTFIRTITRAATE 189
EK+ + GD Y I+ G G +N I G FI AA E
Sbjct: 52 EKWMSFGDHEYVVKAQILAGGRGKGKFINGTKGIGGVFITKEKDAALE 99
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.311 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,588,963
Number of Sequences: 27539
Number of extensions: 200095
Number of successful extensions: 399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 11
length of query: 201
length of database: 12,573,161
effective HSP length: 78
effective length of query: 123
effective length of database: 10,425,119
effective search space: 1282289637
effective search space used: 1282289637
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)
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