GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000493-TA|BGIBMGA000493-PA|undefined
         (201 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.37 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.49 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.1  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.1  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 100 LESAVP-ETEGFGSKTLSVKENIQNVVAGIFQPKP 133
           L+ AVP +  GF  K +SVKE  +  VAG  +  P
Sbjct: 299 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 333


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 100 LESAVP-ETEGFGSKTLSVKENIQNVVAG 127
           L+ AVP +  GF  K +SVKE  +  VAG
Sbjct: 242 LQEAVPGDNVGFNVKNVSVKELRRGYVAG 270


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 100 LESAVP-ETEGFGSKTLSVKENIQNVVAGIFQPKP 133
           L  A+P +  GF  K +SVKE  +  VAG  + +P
Sbjct: 299 LTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQP 333


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 100 LESAVP-ETEGFGSKTLSVKENIQNVVAGIFQPKP 133
           L  A+P +  GF  K +SVKE  +  VAG  + +P
Sbjct: 10  LTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQP 44


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 111 GSKTLSVKENIQNVVAGIFQPKPIVDTISES 141
           G K        Q VVA +  P+P V T++ +
Sbjct: 161 GDKPPLTYHQFQTVVASMDPPEPPVPTVTSA 191


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 109 GFGSKTLSVKENIQNVVAGI 128
           G GSK L  +E I+NV+  I
Sbjct: 167 GEGSKPLFEREEIKNVLTKI 186


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 109 GFGSKTLSVKENIQNVVAGI 128
           G GSK L  +E I+NV+  I
Sbjct: 156 GEGSKPLFEREEIKNVLTKI 175


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 109 GFGSKTLSVKENIQNVVAGI 128
           G GSK L  +E I+NV+  I
Sbjct: 167 GEGSKPLFEREEIKNVLTKI 186


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 109 GFGSKTLSVKENIQNVVAGI 128
           G GSK L  +E I+NV+  I
Sbjct: 167 GEGSKPLFEREEIKNVLTKI 186


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 109 GFGSKTLSVKENIQNVVAGI 128
           G GSK L  +E I+NV+  I
Sbjct: 156 GEGSKPLFEREEIKNVLTKI 175


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.130    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,147
Number of Sequences: 429
Number of extensions: 2072
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 201
length of database: 140,377
effective HSP length: 55
effective length of query: 146
effective length of database: 116,782
effective search space: 17050172
effective search space used: 17050172
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)