Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000492-TA|BGIBMGA000492-PA|IPR001245|Tyrosine protein
kinase, IPR011009|Protein kinase-like, IPR000719|Protein kinase
         (153 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    44   4e-07
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.2  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 44.4 bits (100), Expect = 4e-07
 Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 8   RNVTVSEELNVKVSDYAMFCEEFVGDYHVMADGTRIPLRWMAWEWYVLSSQRCMVIRSYC 67
           RNV V E   VKVSD+ +  + +  + +    G ++P+RWMA E   L+ QR        
Sbjct: 621 RNVLVCENHTVKVSDFGLSRDVYQDNVYCKNGGGKLPVRWMALE--SLTHQRYTTYSDVW 678

Query: 68  LGGPHYCTVRPFEEMNDDQVVGNASEWRCGGRNXXXXXXXXXXXXXELYDLMHECWRREP 127
             G     +     +     VG  S                     +LY +M  CW+  P
Sbjct: 679 SFG---VLLWEIVTLGGTPYVGVHSSELLDFLKSGNRLARPANCSPDLYAVMLNCWKECP 735

Query: 128 IQRPRFHDLHRFLE 141
             RP F +L + LE
Sbjct: 736 KNRPTFTELSKSLE 749


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 5   RFYRNVTVSEELNVKVSDY-AMFCEEFVGDYHVMADGTRIPLRWMAWEWYVLSS 57
           +F  N   +++  V  + Y AM C  +  D  +MA  T   +    + W VLSS
Sbjct: 450 KFEFNTVFNDQRTVFANFYDAMICVAYKFDAAMMALRTSFLVNDFGFIWLVLSS 503


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,547
Number of Sequences: 317
Number of extensions: 1347
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 114,650
effective HSP length: 52
effective length of query: 101
effective length of database: 98,166
effective search space:  9914766
effective search space used:  9914766
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)