GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000492-TA|BGIBMGA000492-PA|IPR001245|Tyrosine protein
kinase, IPR011009|Protein kinase-like, IPR000719|Protein kinase
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.3  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    25   5.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    24   8.8  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 117  DLMHECWRREPIQRPRFHDL 136
            D + +C+ R+P QRPR  DL
Sbjct: 1281 DFIEQCFERDPEQRPRAVDL 1300


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 53  YVLSSQRCMVIRSYCLGGPHY 73
           Y +SS   +++ +YC+GG  Y
Sbjct: 173 YYVSSAELILVENYCMGGDLY 193


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 114 ELYDLMHECWRREPIQRPRFHDL 136
           E  D +++C  + P  RP +H+L
Sbjct: 551 EARDFVNKCLNKNPSLRPDYHEL 573


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,427
Number of Sequences: 5004
Number of extensions: 24575
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)