GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000492-TA|BGIBMGA000492-PA|IPR001245|Tyrosine protein
kinase, IPR011009|Protein kinase-like, IPR000719|Protein kinase
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    33   0.001
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.15 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.15 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 14/141 (9%)

Query: 8   RNVTVSEELNVKVSDYAMFCE-EFVGDYHVMADGTRIPLRWMAWEWYVL----SSQRCMV 62
           RNV V+  L  K++D+ +  E E   +      G +IP+RW A E        S+     
Sbjct: 764 RNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPEAIAFRKFTSASDVWS 823

Query: 63  IRSYCLGGPHYCTVRPFEEMNDDQVVGNASEWRCGGRNXXXXXXXXXXXXXELYDLMHEC 122
           +   C     Y   RP+   ++  V+ +  +   G R               +Y LM +C
Sbjct: 824 MGIVCWEVMSYGE-RPYWNWSNQDVIKSIEK---GYR-----LPAPMDCPEAIYQLMLDC 874

Query: 123 WRREPIQRPRFHDLHRFLERM 143
           W++E   RP F +L + L+++
Sbjct: 875 WQKERTHRPTFANLTQTLDKL 895


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 114 ELYDLMHECWRREPIQRP 131
           E + LM +CW  EP +RP
Sbjct: 830 ECWRLMEQCWSGEPSKRP 847


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 114 ELYDLMHECWRREPIQRP 131
           E + LM +CW  EP +RP
Sbjct: 868 ECWRLMEQCWSGEPSKRP 885


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 66  YCLGGPHYCT--VRPFEEMNDDQVVGNASEWRCGGRNXXXXXXXXXXXXXELYDLMHECW 123
           +CL   +Y +     FE + DD+   + +   C GR+                +L+    
Sbjct: 7   FCLRWNNYQSSITSAFENLRDDEDFVDVT-LACDGRSLKAHRVVLSACSPYFRELLKSTP 65

Query: 124 RREPI---QRPRFHDLHRFLERMTHG 146
            + P+   Q   F DLH  +E + HG
Sbjct: 66  CKHPVIVLQDVAFSDLHALVEFIYHG 91


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 114 ELYDLMHECWRREPIQRPRFH 134
           E  DL+H  WR  P     FH
Sbjct: 37  EYSDLVHPHWRAFPAPGKHFH 57


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.140    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,027
Number of Sequences: 429
Number of extensions: 1804
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)