Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000491-TA|BGIBMGA000491-PA|IPR008979|Galactose-binding
like, IPR000421|Coagulation factor 5/8 type, C-terminal
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    29   1.7  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    29   1.7  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   6.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   8.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.8  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   8.8  

>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 143 NKTMQVDEEVQI-IFNFSTTRTLFFVD-IHTNNMFTKDVQLFKEIEIYFSLEGERWQEDF 200
           +K + V   +Q+ +F  +T+ TL   + +  + + + +   F    ++F+        D 
Sbjct: 178 SKNLSVSNRLQLAVFKETTSSTLSHGNSVEADEINSFNPTPFSSSPLHFTNSSPNPNSDI 237

Query: 201 ISMEPKQDRVSEHARIIHV 219
           ++ + + D VSEHAR  H+
Sbjct: 238 VTPDKQLDVVSEHARYKHL 256


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 9/40 (22%), Positives = 25/40 (62%)

Query: 229 VMMKLYFQHEWILISEVTFKSAPTVVNASVEFLEEYYRTD 268
           V+    + H  +++ ++T     ++++A ++FLE +Y++D
Sbjct: 235 VISPFQYSHSSVIVRKLTKSPESSLLSAFIKFLETFYKSD 274


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 359 VVDEDYREPYNIWRE 373
           VVD++Y+ PY +W++
Sbjct: 62  VVDDNYKRPYAVWKD 76


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 85  DMQSMTGGAKFEDMSYDGILRKGVMIDGMG 114
           D+++     KF D S+D I+    MIDG G
Sbjct: 276 DIETTKLPLKFPDSSFDKIMMISYMIDGQG 305


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 12   FTNRKLNFHMNSLIPGNVNTYTTKKTTLEAPFIASIVRVF 51
            F NR L  H + +    + T   K+  +   + A IV+VF
Sbjct: 1028 FRNRFLEIHFDDIPENELETILHKRCKIAPSYAAKIVQVF 1067


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 121 LGPNDFELPDPMDTRGTRWVGWNKTMQVDEEV-QIIFNFSTTRTLFFVDIHTNNMFTKDV 179
           LG N +   + +  R   W+    T  +  E+ +  FN S    LF     T+    + +
Sbjct: 351 LGRNPYNTTNVL--RAILWLVKAWTTDISPEIIENAFNLSGVLGLFNESAVTSRALDEMI 408

Query: 180 QLFKEIEIYFSLEGERWQEDFISMEPKQDRVSEHARIIHVDLENRTAKHVM 230
              +E+   FS++     EDFIS  P ++ + + +     D+ N+ A   M
Sbjct: 409 HPLRELVSEFSVQAAMRIEDFIS--PSEENIVDSSE----DIINQIASQYM 453


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,206
Number of Sequences: 5004
Number of extensions: 74151
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 7
length of query: 428
length of database: 2,362,478
effective HSP length: 75
effective length of query: 353
effective length of database: 1,987,178
effective search space: 701473834
effective search space used: 701473834
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)