Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000491-TA|BGIBMGA000491-PA|IPR008979|Galactose-binding
like, IPR000421|Coagulation factor 5/8 type, C-terminal
         (428 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.93 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 134 TRGTRWVGWNKTMQVDEEVQIIFNFS 159
           TRG  W+ W + M+V +E+ +  ++S
Sbjct: 383 TRGDLWISWEEGMKVFDELLLDADWS 408


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 186 EIYFSLEGERWQEDFISMEPKQDRVSEHARIIHVDLE 222
           EIY ++EG R+  D    E    RV E  + + + L+
Sbjct: 478 EIYKAIEGIRFIADHTKREEDSTRVKEDWKYVAMVLD 514


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 133 DTRGTRWVGWNKTMQVDEEVQIIFNFST 160
           D   TRW+ +N        + I+ NF T
Sbjct: 115 DDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 133 DTRGTRWVGWNKTMQVDEEVQIIFNFST 160
           D   TRW+ +N        + I+ NF T
Sbjct: 115 DDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 133 DTRGTRWVGWNKTMQVDEEVQIIFNFST 160
           D   TRW+ +N        + I+ NF T
Sbjct: 115 DDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 152 VQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEIEIYFSLEGERWQED 199
           VQ  F  +TT     +D+  N  +T      K    +  L  ER  ED
Sbjct: 559 VQAAFEQNTTDQSMDIDVCDNQTYTSLQMAMKNPIEFTDLSNERKYED 606


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,553
Number of Sequences: 429
Number of extensions: 5071
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 428
length of database: 140,377
effective HSP length: 60
effective length of query: 368
effective length of database: 114,637
effective search space: 42186416
effective search space used: 42186416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)