Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000491-TA|BGIBMGA000491-PA|IPR008979|Galactose-binding
like, IPR000421|Coagulation factor 5/8 type, C-terminal
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0235 + 28575293-28575551,28577346-28577521,28579838-285800... 32 0.77
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449... 31 2.3
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 31 2.3
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 30 3.1
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 30 4.1
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 30 4.1
03_01_0557 + 4143339-4143600,4143674-4144704 29 9.4
03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405... 29 9.4
>05_07_0235 +
28575293-28575551,28577346-28577521,28579838-28580041,
28580177-28580330,28580434-28580780
Length = 379
Score = 32.3 bits (70), Expect = 0.77
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 19 FHMNSLI-PGNVNTYTTKKTTLEAPFIASIVRVFPYAAHPRTACMRVELYGCRWKQA 74
FH +SLI PG ++ YT LEA +V R L C W+Q+
Sbjct: 130 FHTSSLIDPGGISGYTKHMAILEARAAEQVVEACVRTESVRKCVFTSSLLACVWRQS 186
>08_02_1420 +
26942777-26942905,26944415-26944511,26944596-26944962,
26945286-26945793
Length = 366
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 176 TKDVQLFKEIEIYFSLEGERWQEDFISMEPKQDRVSEH 213
T D+ L KE+ +YF + + FI E + ++ S H
Sbjct: 40 TSDIVLLKELRVYFKISSSEFSCHFICREGEAEQTSYH 77
>08_01_0475 -
4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 146 MQVDEEVQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEI 185
MQ ++ Q +STT LF VD H++ ++ LFK +
Sbjct: 771 MQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTV 810
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 128 LPDPMDTRGTRWVGWNKTMQVDEEVQIIFNFSTTRTLFFVDIHTNN 173
L DPM RG WV T QV +E I+F F + N
Sbjct: 170 LVDPMAERGKNWVWARNTDQVSDEGDILFETPDIEEEHFYSLAAEN 215
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 202 SMEPKQDRVSEHARIIHVDLENRTAKHVMMKLYFQHEWIL 241
S +PK+ ++ARI D RT KHV+ K+ + E L
Sbjct: 503 SWDPKESLPQDYARIFAFDNFTRTQKHVLAKMAERDEGTL 542
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 29.9 bits (64), Expect = 4.1
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 78 YSAPKGGDMQSMTGGAKFEDMSYDGILRKGVMI-DGMGQITDSLLGPNDFELPDPMDTRG 136
Y AP + TGG E ++D + G+ I D G TD G +++P+ T
Sbjct: 264 YQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKDVDGDDTD---GETPWQIPNASGTFA 320
Query: 137 TRWVGWNKTMQVDEEVQIIFNFSTTRT 163
T + Q D+ ++ N+ +T
Sbjct: 321 TA----DSFQQNDKTLEEAINYPLLKT 343
>03_01_0557 + 4143339-4143600,4143674-4144704
Length = 430
Score = 28.7 bits (61), Expect = 9.4
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 139 WVGWNKTMQVDEEVQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEIEIYFSLEGERWQE 198
W W K VD+ I+ + S L ++ NN TK+++L + I +L +
Sbjct: 288 WKDWRKRFTVDK-TDILVDPSYAAVL--PELWDNN--TKNMELKRLICSIPTLS--MLDD 340
Query: 199 DFISMEPKQDRVSEHARIIHVDLENRTAKHV 229
DF+ M K + ++A II VD+++ T + V
Sbjct: 341 DFLYMITKMNEEDKNAWIISVDMKHNTLQDV 371
>03_01_0540 -
4055635-4055743,4055829-4055981,4056037-4056104,
4056486-4056580,4057180-4057241,4057371-4057410,
4058124-4059141,4059231-4059611,4059873-4059880,
4061005-4061067,4061416-4061719
Length = 766
Score = 28.7 bits (61), Expect = 9.4
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 139 WVGWNKTMQVDE-EVQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEIEIYFSLEGERWQ 197
W W K VD+ ++ + ++ST D+ +N TK +QL K I +L +
Sbjct: 480 WKDWRKRFSVDKFDILVDPSYSTV----LPDLWDDN--TKMMQLKKLICTIPTLS--MYD 531
Query: 198 EDFISMEPKQDRVSEHARIIHVDLENRTAKHV 229
+DF+ M ++A II VD++ T + V
Sbjct: 532 DDFVYMMSTMTEEDKNAWIISVDMKQNTLQAV 563
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,880
Number of Sequences: 37544
Number of extensions: 471458
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 8
length of query: 428
length of database: 14,793,348
effective HSP length: 84
effective length of query: 344
effective length of database: 11,639,652
effective search space: 4004040288
effective search space used: 4004040288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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