GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000491-TA|BGIBMGA000491-PA|IPR008979|Galactose-binding
like, IPR000421|Coagulation factor 5/8 type, C-terminal
         (428 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical pr...   124   2e-28
U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical pr...   124   2e-28
U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical pr...    30   3.6  
Z14092-7|CAB54285.1|  274|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U41532-4|AAK68320.1|  767|Caenorhabditis elegans Hypothetical
           protein F11D5.3b protein.
          Length = 767

 Score =  124 bits (298), Expect = 2e-28
 Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 25  IPGNVNTYTTKKTTLEAPFIASIVRVFPYAAHPRTACMRVELYGCRWKQALIAYSAPKGG 84
           IP N +T    +  L+   IA  +R+ P +   RT CMRVE++GC +  +L+ Y+  +G 
Sbjct: 107 IPANNDTEHAIRRHLDRAIIARRIRIVPVSNSTRTVCMRVEVFGCPFDDSLVFYNVDQG- 165

Query: 85  DMQSMTGGAKFEDMSYDGILRKGV-MIDGMGQITDSLLGPNDFELPDPMDTRGTRWVGWN 143
           D+QS   G  + D SYDG L     +  G+G++ D  +G N+      +     +WVGW 
Sbjct: 166 DLQS---GISYHDFSYDGNLANSPHLTGGIGKLYDGEVGKNN------VFVNHHKWVGWR 216

Query: 144 KTMQVDEEVQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEIEIYFSLEGERWQEDFISM 203
           +    +  V++ F FS  R +  + IHT+N F K  + F    + FS+ G+ + +  +  
Sbjct: 217 RKR--NGNVKLAFEFSELRNISGILIHTSNEFKKSAKAFSSATVLFSINGKDFSDTIVHF 274

Query: 204 EPKQDRVSEHARIIHVDLENRTAKHVMMKLYF--QHEWILISEVTFKSAPT 252
              +D  SE  R I + + NR AK   ++L F    +W+ ISEV F+S  T
Sbjct: 275 NNPEDTESEVPRWIRIPVNNRIAKVAKIRLNFGTDSDWLFISEVNFESNHT 325


>U41532-3|AAK68319.1|  797|Caenorhabditis elegans Hypothetical
           protein F11D5.3a protein.
          Length = 797

 Score =  124 bits (298), Expect = 2e-28
 Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 25  IPGNVNTYTTKKTTLEAPFIASIVRVFPYAAHPRTACMRVELYGCRWKQALIAYSAPKGG 84
           IP N +T    +  L+   IA  +R+ P +   RT CMRVE++GC +  +L+ Y+  +G 
Sbjct: 137 IPANNDTEHAIRRHLDRAIIARRIRIVPVSNSTRTVCMRVEVFGCPFDDSLVFYNVDQG- 195

Query: 85  DMQSMTGGAKFEDMSYDGILRKGV-MIDGMGQITDSLLGPNDFELPDPMDTRGTRWVGWN 143
           D+QS   G  + D SYDG L     +  G+G++ D  +G N+      +     +WVGW 
Sbjct: 196 DLQS---GISYHDFSYDGNLANSPHLTGGIGKLYDGEVGKNN------VFVNHHKWVGWR 246

Query: 144 KTMQVDEEVQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEIEIYFSLEGERWQEDFISM 203
           +    +  V++ F FS  R +  + IHT+N F K  + F    + FS+ G+ + +  +  
Sbjct: 247 RKR--NGNVKLAFEFSELRNISGILIHTSNEFKKSAKAFSSATVLFSINGKDFSDTIVHF 304

Query: 204 EPKQDRVSEHARIIHVDLENRTAKHVMMKLYF--QHEWILISEVTFKSAPT 252
              +D  SE  R I + + NR AK   ++L F    +W+ ISEV F+S  T
Sbjct: 305 NNPEDTESEVPRWIRIPVNNRIAKVAKIRLNFGTDSDWLFISEVNFESNHT 355


>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 19/243 (7%)

Query: 11  KFTNRKLNFHMNSLIPGNVNTYTTKKTTLEAPFIASIVRVFPYAAHPRTACMRVELYGCR 70
           ++ NR  + +M+    GN +T T     L+ P +AS +R  P + + RT CMR E++GC+
Sbjct: 126 RYKNRTGHVYMD----GNFDTTTPVIRVLDPPIVASRIRFVPSSKNTRTVCMRAEIHGCK 181

Query: 71  WKQALIAYSAPKGGDMQSMT-GGAKFEDMSYDGILRKGVMIDGMGQITDSLLGPNDFELP 129
            +      + P G  + ++    + FED         G+   G                P
Sbjct: 182 HEGVTYYSTVPDGSRLDTLDFKDSMFEDSQI--YTESGIKRYGSWPANRRF---RSAASP 236

Query: 130 DPMDTRGTRWVGWNKTMQVDEEVQIIFNFSTTRTLFFVDIHTNNMFTKDVQLFKEIEIYF 189
              +     W+GWN+    D  + I+F F       F D+       +       I++ F
Sbjct: 237 FEKNQMNNSWIGWNRD-TTDGRITILFEFEEVHN--FTDVVLATFGNR----IDGIDVIF 289

Query: 190 SLEGERWQ-EDFISMEPKQDRVSEHARI-IHVDLENRTAKHVMMKLYFQHEWILISEVTF 247
           S +G+ +     IS   +Q   +   R    V L NR  + V + + F  +W+ ++EV F
Sbjct: 290 SQDGKTFPLFSQISSSERQSLNNTSRRYDFRVPLHNRAGRKVRISIKFSSDWMFLTEVHF 349

Query: 248 KSA 250
            SA
Sbjct: 350 TSA 352


>Z81035-3|CAB02732.1|  333|Caenorhabditis elegans Hypothetical
           protein C15H11.4 protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 21  MNSLIPGNVNTYTTKKTTLEAPFIASIVRVF 51
           +NSL PG VNT   + T L  P I  I  VF
Sbjct: 238 VNSLHPGVVNTELARNTILNTPGIKQITAVF 268


>Z14092-7|CAB54285.1|  274|Caenorhabditis elegans Hypothetical
           protein R107.5b protein.
          Length = 274

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 360 VDEDYREPYNIWRETLGRRDKREIHDQNEYNEICEDTEFP 399
           +  D   P NI RE+    +  E++D + +++  E T  P
Sbjct: 76  ISNDKPSPINICRESSSDEEMDEVYDDSNFDQCTESTSIP 115


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,296
Number of Sequences: 27539
Number of extensions: 408987
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 5
length of query: 428
length of database: 12,573,161
effective HSP length: 83
effective length of query: 345
effective length of database: 10,287,424
effective search space: 3549161280
effective search space used: 3549161280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)