GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000491-TA|BGIBMGA000491-PA|IPR008979|Galactose-binding
like, IPR000421|Coagulation factor 5/8 type, C-terminal
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat...    30   2.6  
At2g22920.2 68415.m02722 serine carboxypeptidase S10 family prot...    29   5.9  
At2g22920.1 68415.m02721 serine carboxypeptidase S10 family prot...    29   5.9  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    29   5.9  
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica...    29   7.9  

>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
           catalytic subunit, putative similar to SP|Q07864 DNA
           polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
           (DNA polymerase II subunit A) {Homo sapiens}; contains
           Pfam profiles: PF03175 DNA polymerase type B, organellar
           and viral, PF00136 DNA polymerase family B, PF03104 DNA
           polymerase family B, exonuclease domain
          Length = 2138

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 85  DMQSMTGGAKFEDMSYDGILRKGVMIDGMG-QITDSLLGPNDFELPDPMDTRGTRWVGWN 143
           D++++    KF D  YD I+    M+DG G  IT+      D E  D   T    + G+ 
Sbjct: 239 DIETVKLPLKFPDAEYDQIMMISYMVDGQGFLITNRECVGKDIE--DLEYTPKPEFEGYF 296

Query: 144 KTMQVDEEVQII 155
           K   V  EV+++
Sbjct: 297 KVTNVTNEVELL 308


>At2g22920.2 68415.m02722 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 435

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 7   LPYEKFTNRKLNFHMNSLIPGNVNTYTTKKTTLEAPFIAS 46
           +PY K  N  + +HMN+ I G  +   +    L  PF+A+
Sbjct: 329 IPYNKDINNSIPYHMNNSISGYRSLIYSGDHDLVVPFLAT 368


>At2g22920.1 68415.m02721 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 408

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 7   LPYEKFTNRKLNFHMNSLIPGNVNTYTTKKTTLEAPFIAS 46
           +PY K  N  + +HMN+ I G  +   +    L  PF+A+
Sbjct: 329 IPYNKDINNSIPYHMNNSISGYRSLIYSGDHDLVVPFLAT 368


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 172 NNMFTKDVQLFKEIEIYFSLEGERWQEDFISMEPK--QDRVSEHARIIHVDLENRTAKHV 229
           +  F K VQ+ K++ I         +E+F   +P   +D V +  R+I V LEN T KH 
Sbjct: 306 DTFFEKHVQVRKDLHI---------EENFEESDPPFPKDAVLQVLRVIRVVLENCTNKH- 355

Query: 230 MMKLYFQHEWILISEVTFKSAPTVVNASVEFLE 262
               Y QH  +L++          +     FL+
Sbjct: 356 FYSSYEQHLSLLLASTDADVVEACLQTLAAFLK 388


>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
           to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
           thaliana)
          Length = 616

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 351 PIHMLRPAVVDEDYREPYNIWRE 373
           P+ ++RP+V++  Y++P+  W E
Sbjct: 376 PVVIIRPSVIESTYKDPFPGWME 398


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,006
Number of Sequences: 28952
Number of extensions: 379904
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 7
length of query: 428
length of database: 12,070,560
effective HSP length: 83
effective length of query: 345
effective length of database: 9,667,544
effective search space: 3335302680
effective search space used: 3335302680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)