Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (380 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    26   0.51 
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    26   0.51 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   4.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  

>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 139 HFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFR 198
           H  +M+   +R  I        K  K P T  E+   +FL + +G ++S  + K    F 
Sbjct: 308 HVPIMIGYTTREGILSEVLQRPKPFK-PITDFELAVPSFLKLQRGSDISKLVAKNIKEFY 366

Query: 199 VNSYPCPESAKERLEMISQLETRMSDLEEILSKSKY 234
             +    +  K++  +   LET    L EI    KY
Sbjct: 367 YGNEEPTDKNKDKFYL---LETDNFFLREIWRTVKY 399


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 139 HFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFR 198
           H  +M+   +R  I        K  K P T  E+   +FL + +G ++S  + K    F 
Sbjct: 308 HVPIMIGYTTREGILSEVLQRPKPFK-PITDFELAVPSFLKLQRGSDISKLVAKNIKEFY 366

Query: 199 VNSYPCPESAKERLEMISQLETRMSDLEEILSKSKY 234
             +    +  K++  +   LET    L EI    KY
Sbjct: 367 YGNEEPTDKNKDKFYL---LETDNFFLREIWRTVKY 399


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 298 SETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYGDS 341
           +E  GTN  +  SK++ S +PP      K  H  Q  +NA G++
Sbjct: 179 TEKAGTNNNN--SKSSQSSNPPQIYPWMKRVHLGQSTVNANGET 220


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 202 YPCPESAKERLEMISQLETRMSDLEEILSKSKY 234
           YP     K+R E  +    ++  LE +  K++Y
Sbjct: 61  YPAGNQRKQRRERTTFTRAQLDVLEALFGKTRY 93


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 46   EPKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLEL 86
            E + L   E++ ++++L+K+   I    E   ++ K  +EL
Sbjct: 1224 EVEFLSSTEILFWKDLLDKYLYPIDENKEEKARIAKELIEL 1264


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 46   EPKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLEL 86
            E + L   E++ ++++L+K+   I    E   ++ K  +EL
Sbjct: 1224 EVEFLSSTEILFWKDLLDKYLYPIDENKEEKARIAKELIEL 1264


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,195
Number of Sequences: 317
Number of extensions: 3767
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 380
length of database: 114,650
effective HSP length: 58
effective length of query: 322
effective length of database: 96,264
effective search space: 30997008
effective search space used: 30997008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)