BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0 complex, 116-kDa subunit (380 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 126 4e-30 SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 33 0.088 SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 30 0.47 SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 28 1.9 SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 2.5 SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 27 4.4 SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 4.4 SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf... 27 4.4 SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 27 5.8 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 5.8 SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 5.8 >SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces pombe|chr 1|||Manual Length = 805 Score = 126 bits (305), Expect = 4e-30 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 1/220 (0%) Query: 130 GVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTR 189 G++ K E +LWR RGN++ Q D L E K FL + G ++ R Sbjct: 178 GIIPTVKFQFLERILWRTLRGNLFIHQVRADDSLIHGAEKNE-EKTIFLVIAHGTQILLR 236 Query: 190 MEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQN 249 + KI +P E A R I Q +SDL +L ++ L + + Sbjct: 237 IRKISESLGATLFPVEEDAPGRTSQIQQANVSISDLNAVLENTRSALYTELTFIAEHISA 296 Query: 250 GIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWIPERDLMRVQDILVECSETIGTNVPSFI 309 + K K ++ MNLF+ D KCLI + W P +L VQ L S+ + P+ + Sbjct: 297 WEAVLHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL 356 Query: 310 SKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSMYRELNPG 349 + S PPT+ R NK+T GFQ +I++YG + YRE+N G Sbjct: 357 NVVHTSEQPPTYFRVNKFTEGFQSIIDSYGIATYREVNHG 396 Score = 54.0 bits (124), Expect = 3e-08 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%) Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60 +NPDV AFQR+++ E+ R + ER LRY+ +E+ + I+VPD P E E+ Sbjct: 15 LNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLPPSYESVLESSTIED 74 Query: 61 ILE---KWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGA 117 I+E + + + + E+ L YL+ E VL + + D N + Sbjct: 75 IIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKSGNTVDPLRNNYETS 134 Query: 118 DILPG 122 I G Sbjct: 135 SIFSG 139 >SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizosaccharomyces pombe|chr 1|||Manual Length = 1290 Score = 32.7 bits (71), Expect = 0.088 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Query: 184 EELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTV 243 +E S +EK+ S F E KE E+ LE + SDLE +L + + K + Sbjct: 295 DESSEDLEKLHSNFA-------EKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDL 347 Query: 244 GKQWQNGIVQVKKAKAIYHTM 264 GK Q I ++K K TM Sbjct: 348 GK-IQGEIESLEKLKVKKSTM 367 >SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 599 Score = 30.3 bits (65), Expect = 0.47 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60 ++P+ +TEVC LR L +Y+ V KAL+ N + N Sbjct: 370 LDPEFTDIFLGVLTEVCLDPSQPYTLR------LSGAMYIGSYVARAKALEKNTIQIIVN 423 Query: 61 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQ 95 ++ +W EN +L+ L + + Y +NQ Sbjct: 424 MMTRWVEAYLDQCEN--ELSDDLLSKHSVFYAINQ 456 >SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 498 Score = 28.3 bits (60), Expect = 1.9 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 38 IYVPDS-VQEPKALQPNEMIAYENILEKW---KNDITVMSENHTKLNKSYLELNEMLYVL 93 +Y+PD + P +P I ++ +K +ND + N+T+L + + LN + + Sbjct: 348 LYIPDCLIGRPSEKKPKFKITGKDATKKIFGARNDYAFRASNNTELMRWWEALNTHIANV 407 Query: 94 NQIGPLLGDN 103 N I PL N Sbjct: 408 NYIQPLSNAN 417 >SPBC365.07c |||TATA element modulatory factor homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 27.9 bits (59), Expect = 2.5 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 20 AEMERKLRYVEAELLKDNIYVPDS--VQEPKALQPNEMIAYENILEKWKNDITVMSENHT 77 +E E KL+ ++ + + V DS ++E LQ ++ +ILEK K D+ E T Sbjct: 74 SEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEELT 133 Query: 78 KLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSK 110 + + L + L+ + +R D K Sbjct: 134 VESMEVVRLTRQVETLSTQYSIQRSQWVREDEK 166 >SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 331 Score = 27.1 bits (57), Expect = 4.4 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 282 IPERDLMRVQDILVECSET--IGTNVPSFI 309 IP+ D++RV DIL S++ +G N P I Sbjct: 132 IPQHDMLRVSDILKTQSKSRLVGPNCPGII 161 >SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1284 Score = 27.1 bits (57), Expect = 4.4 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 33 LLKDNIYVPDSVQEPKALQPN--EMIAYENILEKWKNDITVMSENHTKLNKSYLELNEML 90 LL D+ + + K +P+ E N+L +W + + + S ++ + K ++ +L Sbjct: 164 LLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISYAQTEKQEAKVTPLL 223 Query: 91 YVLNQIGPLLGDNDMRR 107 ++N LL RR Sbjct: 224 AIINMSLVLLSAFPTRR 240 >SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf8|Schizosaccharomyces pombe|chr 1|||Manual Length = 109 Score = 27.1 bits (57), Expect = 4.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 222 MSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQ-VKKAKAIYHTMNLFSLDI 271 + DL+ I K+ + TL TVG Q+ G+V+ +KK A+ N +D+ Sbjct: 32 IGDLKIIKEKNSEKKKATL-TVGNQYMEGVVESLKKPLAVLQKTNADPVDV 81 >SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces pombe|chr 2|||Manual Length = 760 Score = 26.6 bits (56), Expect = 5.8 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 147 VSRG-NIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCP 205 ++RG ++Y+R T +K PF+ ++R ++ + TR + VN+Y C Sbjct: 150 LTRGYDLYFRPVTRNK---KPFSVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTCD 206 Query: 206 ESAKERLEMISQ 217 E + I Q Sbjct: 207 RCGYEVFQEIRQ 218 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 26.6 bits (56), Expect = 5.8 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 212 LEMISQLETRMSD---LEEILSKSKYIRCKTLRTVGKQW---QNGIVQVKKAKAIYHTMN 265 +E++S+LE S+ LEE+ +IR Q NG +KKA + + Sbjct: 12 VELLSRLEGCPSEKVLLEELRKLRGFIRNDIPSNFFPQLFITDNGFAAIKKAVTKLNFQS 71 Query: 266 LFSLDITKKCL 276 L SLDI + CL Sbjct: 72 LLSLDIFECCL 82 >SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 719 Score = 26.6 bits (56), Expect = 5.8 Identities = 19/93 (20%), Positives = 41/93 (44%) Query: 13 ITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVM 72 ++++ A + +K + EA LL+ V + + + N +L + + Sbjct: 262 VSKLLHQANVNKKTKSREAALLRARAVVKKKERGKQNVPTNVNFPALQLLHDPQGFAEEL 321 Query: 73 SENHTKLNKSYLELNEMLYVLNQIGPLLGDNDM 105 E H +KS L +++ L VL + L+G + + Sbjct: 322 FEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKL 354 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,794,523 Number of Sequences: 5004 Number of extensions: 76110 Number of successful extensions: 239 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 234 Number of HSP's gapped (non-prelim): 12 length of query: 380 length of database: 2,362,478 effective HSP length: 74 effective length of query: 306 effective length of database: 1,992,182 effective search space: 609607692 effective search space used: 609607692 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 55 (26.2 bits)
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