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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...   126   4e-30
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    33   0.088
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    30   0.47 
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    28   1.9  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    28   2.5  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    27   4.4  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   4.4  
SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf...    27   4.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    27   5.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   5.8  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   5.8  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score =  126 bits (305), Expect = 4e-30
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 1/220 (0%)

Query: 130 GVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTR 189
           G++   K    E +LWR  RGN++  Q   D  L       E  K  FL +  G ++  R
Sbjct: 178 GIIPTVKFQFLERILWRTLRGNLFIHQVRADDSLIHGAEKNE-EKTIFLVIAHGTQILLR 236

Query: 190 MEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQN 249
           + KI        +P  E A  R   I Q    +SDL  +L  ++      L  + +    
Sbjct: 237 IRKISESLGATLFPVEEDAPGRTSQIQQANVSISDLNAVLENTRSALYTELTFIAEHISA 296

Query: 250 GIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWIPERDLMRVQDILVECSETIGTNVPSFI 309
               + K K ++  MNLF+ D   KCLI + W P  +L  VQ  L   S+   +  P+ +
Sbjct: 297 WEAVLHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL 356

Query: 310 SKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSMYRELNPG 349
           +    S  PPT+ R NK+T GFQ +I++YG + YRE+N G
Sbjct: 357 NVVHTSEQPPTYFRVNKFTEGFQSIIDSYGIATYREVNHG 396



 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 1   MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
           +NPDV AFQR+++ E+ R  + ER LRY+ +E+  + I+VPD    P      E    E+
Sbjct: 15  LNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLPPSYESVLESSTIED 74

Query: 61  ILE---KWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGA 117
           I+E   + +  +  + E+   L   YL+  E   VL +       +    D    N   +
Sbjct: 75  IIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKSGNTVDPLRNNYETS 134

Query: 118 DILPG 122
            I  G
Sbjct: 135 SIFSG 139


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 32.7 bits (71), Expect = 0.088
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 184 EELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTV 243
           +E S  +EK+ S F        E  KE  E+   LE + SDLE +L   + +  K    +
Sbjct: 295 DESSEDLEKLHSNFA-------EKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDL 347

Query: 244 GKQWQNGIVQVKKAKAIYHTM 264
           GK  Q  I  ++K K    TM
Sbjct: 348 GK-IQGEIESLEKLKVKKSTM 367


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 1   MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
           ++P+        +TEVC        LR      L   +Y+   V   KAL+ N +    N
Sbjct: 370 LDPEFTDIFLGVLTEVCLDPSQPYTLR------LSGAMYIGSYVARAKALEKNTIQIIVN 423

Query: 61  ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQ 95
           ++ +W        EN  +L+   L  + + Y +NQ
Sbjct: 424 MMTRWVEAYLDQCEN--ELSDDLLSKHSVFYAINQ 456


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 38  IYVPDS-VQEPKALQPNEMIAYENILEKW---KNDITVMSENHTKLNKSYLELNEMLYVL 93
           +Y+PD  +  P   +P   I  ++  +K    +ND    + N+T+L + +  LN  +  +
Sbjct: 348 LYIPDCLIGRPSEKKPKFKITGKDATKKIFGARNDYAFRASNNTELMRWWEALNTHIANV 407

Query: 94  NQIGPLLGDN 103
           N I PL   N
Sbjct: 408 NYIQPLSNAN 417


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 20  AEMERKLRYVEAELLKDNIYVPDS--VQEPKALQPNEMIAYENILEKWKNDITVMSENHT 77
           +E E KL+ ++ +     + V DS  ++E   LQ ++     +ILEK K D+    E  T
Sbjct: 74  SEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEELT 133

Query: 78  KLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSK 110
             +   + L   +  L+    +     +R D K
Sbjct: 134 VESMEVVRLTRQVETLSTQYSIQRSQWVREDEK 166


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 282 IPERDLMRVQDILVECSET--IGTNVPSFI 309
           IP+ D++RV DIL   S++  +G N P  I
Sbjct: 132 IPQHDMLRVSDILKTQSKSRLVGPNCPGII 161


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 33  LLKDNIYVPDSVQEPKALQPN--EMIAYENILEKWKNDITVMSENHTKLNKSYLELNEML 90
           LL D+  +  +    K  +P+  E     N+L +W + + + S ++ +  K   ++  +L
Sbjct: 164 LLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISYAQTEKQEAKVTPLL 223

Query: 91  YVLNQIGPLLGDNDMRR 107
            ++N    LL     RR
Sbjct: 224 AIINMSLVLLSAFPTRR 240


>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
           Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 222 MSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQ-VKKAKAIYHTMNLFSLDI 271
           + DL+ I  K+   +  TL TVG Q+  G+V+ +KK  A+    N   +D+
Sbjct: 32  IGDLKIIKEKNSEKKKATL-TVGNQYMEGVVESLKKPLAVLQKTNADPVDV 81


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 147 VSRG-NIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCP 205
           ++RG ++Y+R  T +K    PF+  ++R     ++     + TR   +     VN+Y C 
Sbjct: 150 LTRGYDLYFRPVTRNK---KPFSVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTCD 206

Query: 206 ESAKERLEMISQ 217
               E  + I Q
Sbjct: 207 RCGYEVFQEIRQ 218


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 212 LEMISQLETRMSD---LEEILSKSKYIRCKTLRTVGKQW---QNGIVQVKKAKAIYHTMN 265
           +E++S+LE   S+   LEE+     +IR         Q     NG   +KKA    +  +
Sbjct: 12  VELLSRLEGCPSEKVLLEELRKLRGFIRNDIPSNFFPQLFITDNGFAAIKKAVTKLNFQS 71

Query: 266 LFSLDITKKCL 276
           L SLDI + CL
Sbjct: 72  LLSLDIFECCL 82


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 19/93 (20%), Positives = 41/93 (44%)

Query: 13  ITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVM 72
           ++++   A + +K +  EA LL+    V    +  + +  N       +L   +     +
Sbjct: 262 VSKLLHQANVNKKTKSREAALLRARAVVKKKERGKQNVPTNVNFPALQLLHDPQGFAEEL 321

Query: 73  SENHTKLNKSYLELNEMLYVLNQIGPLLGDNDM 105
            E H   +KS L +++ L VL  +  L+G + +
Sbjct: 322 FEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKL 354


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,523
Number of Sequences: 5004
Number of extensions: 76110
Number of successful extensions: 239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 12
length of query: 380
length of database: 2,362,478
effective HSP length: 74
effective length of query: 306
effective length of database: 1,992,182
effective search space: 609607692
effective search space used: 609607692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)

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