Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
(380 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila... 190 1e-48
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 190 2e-48
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila... 184 9e-47
At4g29050.1 68417.m04155 lectin protein kinase family protein co... 33 0.24
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 31 0.97
At3g61570.1 68416.m06896 intracellular protein transport protein... 31 1.7
At1g21810.1 68414.m02729 expressed protein 31 1.7
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain... 30 2.2
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 30 2.9
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 30 2.9
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 29 3.9
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ... 29 3.9
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 29 5.2
At1g72250.1 68414.m08353 kinesin motor protein-related 29 5.2
At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative (I... 29 5.2
At1g08125.1 68414.m00891 Expressed protein 29 5.2
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 28 9.0
At3g50040.1 68416.m05471 expressed protein putative protein - Ar... 28 9.0
At1g66300.1 68414.m07529 F-box family protein contains F-box dom... 28 9.0
>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 817
Score = 190 bits (463), Expect = 1e-48
Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 25/369 (6%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIA-YE 59
+N D FQR + +V RC EM RKLR+ + ++ K + ++ ++P+ + E
Sbjct: 49 LNADKSPFQRTFANQVKRCGEMSRKLRFFKDQIDKAGLRCSPRLE----IEPDIALGDLE 104
Query: 60 NILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLL--------GDNDMRRDSKF 111
L ++++ M+ N KL ++Y EL E VL + L G+ +S +
Sbjct: 105 RQLADHEHEVLEMNSNSEKLRQTYNELLEFKIVLEKASGFLVSSNTHAIGEEIELHESTY 164
Query: 112 PN---LRGADILPG----GH-----LIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATE 159
N + A +L GH L + G++ + K FE ML+R +RGN+ + Q T
Sbjct: 165 SNNGFIETASLLEQEMNPGHSNQSGLRFISGIINKDKLLKFERMLFRATRGNMLFNQTTS 224
Query: 160 DKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLE 219
D+ + DP T + KV F+ GE+ T++ KI F N YP PE ++ ++ ++
Sbjct: 225 DEEIMDPSTSEMVEKVVFVVFFSGEQARTKILKICEAFGANCYPVPEDTTKQRQLTREVL 284
Query: 220 TRMSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKAIYHTMNLFSLDITKKCLIGQ 279
+R+SDLE L R L +VG N I V++ KA+Y T+N+ + D+TKKCL+G+
Sbjct: 285 SRLSDLEATLDAGTRHRNNALNSVGYSLTNWITTVRREKAVYDTLNMLNFDVTKKCLVGE 344
Query: 280 CWIPERDLMRVQDILVECSETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYG 339
W P ++ ++L + + V SPPT+ RTNK T+ FQ +I+AYG
Sbjct: 345 GWCPTFAKTQIHEVLQRATFDSSSQVGVIFHVMQAVESPPTYFRTNKLTNAFQEIIDAYG 404
Query: 340 DSMYRELNP 348
+ Y+E NP
Sbjct: 405 VARYQEANP 413
>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
to vacuolar proton ATPase 100-kDa subunit from
Dictyostelium discoideum P|1384136|gb|AAB49621
Length = 821
Score = 190 bits (462), Expect = 2e-48
Identities = 110/366 (30%), Positives = 189/366 (51%), Gaps = 21/366 (5%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
+N + FQR Y ++ RC EM RK+R+ + ++ K + +++ + +++ E
Sbjct: 53 LNSEKSPFQRTYAAQIKRCGEMARKIRFFKEQMSKAGVTPKETLDRENDIDLDDV---EV 109
Query: 61 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLR----G 116
LE+ + ++ ++ N+ KL +SY EL E VL + G ++ + G
Sbjct: 110 KLEELEAELVEINANNDKLQRSYNELVEYKLVLEKAGEFFASAHRSATAQQSEIETEQVG 169
Query: 117 ADILPGG--------------HLIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKI 162
D+L L + G+V R KS FE +L+R +RGNI+ RQ+ ++
Sbjct: 170 EDLLEAPLLQEEKSVDPTKQVKLGFLTGLVPREKSMVFERILFRATRGNIFIRQSVIEES 229
Query: 163 LKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRM 222
+ DP +G + K F+ GE +++ KI F N YP E ++ +M++++ R+
Sbjct: 230 VVDPNSGEKAEKNVFVVFYSGERAKSKILKICEAFGANRYPFSEDLGKQAQMMTEVSGRL 289
Query: 223 SDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWI 282
S+L+ + R L T+G +++ ++++K KAIYHT+N+ SLD+TKKCL+G+ W
Sbjct: 290 SELKTTIGAGLDQRNILLETIGDKFEQWNLKIRKEKAIYHTLNMLSLDVTKKCLVGEGWS 349
Query: 283 PERDLMRVQDILVECSETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSM 342
P +QD L + + V S PPTF RTNK+T FQ +++AYG +
Sbjct: 350 PVFAATEIQDALHRAAVDSNSQVGSIFQVLRTKEMPPTFFRTNKFTTAFQEIVDAYGVAK 409
Query: 343 YRELNP 348
Y+E NP
Sbjct: 410 YQEANP 415
>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 821
Score = 184 bits (448), Expect = 9e-47
Identities = 112/368 (30%), Positives = 188/368 (51%), Gaps = 23/368 (6%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
+N + FQR Y ++ RC EM RK+R+ ++ K + + + + +++ E
Sbjct: 52 LNSEKSPFQRTYAAQIKRCGEMARKIRFFRDQMSKAGVPAKEMQGKENDIDLDDV---EV 108
Query: 61 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDN-----DMRRDSKFPNLR 115
L + + ++ ++ N+ KL +SY EL E VL + G D +R+++
Sbjct: 109 KLGELEAELVEINANNDKLQRSYNELMEYKLVLQKAGEFFSSAHRSAADQQRETESQQA- 167
Query: 116 GADILPGG--------------HLIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDK 161
G D+L L + G+V R KS FE +L+R +RGNI+ RQ ++
Sbjct: 168 GEDLLESPLLQEEKSIDSTKQVKLGFLTGLVPREKSMVFERILFRATRGNIFIRQTVIEE 227
Query: 162 ILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETR 221
+ DP +G + K F+ GE +++ KI F N YP E + +MI+++ R
Sbjct: 228 PVIDPNSGEKAEKNVFVVFYSGERAKSKILKICEAFGANRYPFSEDLGRQAQMITEVSGR 287
Query: 222 MSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKAIYHTMNLFSLDITKKCLIGQCW 281
+S+L+ + R L+T+G +++ ++V+K KAIYHT+N+ SLD+TKKCL+ + W
Sbjct: 288 LSELKTTIDAGLGQRNILLQTIGDKFELWNLKVRKEKAIYHTLNMLSLDVTKKCLVAEGW 347
Query: 282 IPERDLMRVQDILVECSETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYGDS 341
P +QD L + + V S SPPT+ RTNK+T Q +++AYG +
Sbjct: 348 SPVFASREIQDALQRAAVDSNSQVGSIFQVLRTKESPPTYFRTNKFTSAIQEIVDAYGVA 407
Query: 342 MYRELNPG 349
Y+E NPG
Sbjct: 408 KYQEANPG 415
>At4g29050.1 68417.m04155 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 669
Score = 33.5 bits (73), Expect = 0.24
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 47 PKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLE 85
P+A P+EM+ + +L+ W++DI + + K + YLE
Sbjct: 547 PRASSPSEMVLTDWVLDCWEDDILQVVDERVKQDDKYLE 585
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 31.5 bits (68), Expect = 0.97
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 2 NPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENI 61
N V + T + R +E+E K+ VE E L+ + + S ++ +ALQ + + E
Sbjct: 338 NAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALNGSKEQIEALQ-SRLKEIEGK 396
Query: 62 LEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSK 110
L + K E L +S ++ ++ LN+ L + + RR K
Sbjct: 397 LSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEK 445
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 4 DVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQ------EPKALQPNEMIA 57
++Q Y E+ ER+L + EL+K + + DS + + K ++++
Sbjct: 463 NLQTALGQYYAEIEAKEHFERELAMAKDELMKLSARLKDSDERLESSNKEKEDVTSKLLH 522
Query: 58 YENILEKWKNDITVMSENHTK----LNKSYLELNEM 89
E + +WKN +T + E++ K L +S LN M
Sbjct: 523 AEKVAAEWKNRVTKVEEDNAKVRRVLEQSMTRLNRM 558
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 5 VQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENILEK 64
+QA + + EV C E E++L ++ D + + D ++ +A + +++ + +K
Sbjct: 279 IQAEKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEAEKAELKTSFDVLKDK 338
Query: 65 WKNDITVMSENHTKLNKSYLELNEM 89
++ E TKL K E +E+
Sbjct: 339 YQESRVCFQEVDTKLEKLQAEKDEL 363
>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein predicted proteins,
Arabidopsis thaliana and Drosophila melanogaster
contains Pfam profile PF00564: PB1 domain
Length = 531
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 38 IYVPDSVQEPKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIG 97
+ VP V EP L+P +M + +L+ ++ + N ++ + E +M+ + +Q
Sbjct: 204 VKVPQPVPEPVVLEPPQMFVDQRMLQP-EHGV-----NPAEIQRQIQEF-QMIQIRDQEQ 256
Query: 98 PLLGDNDMRRDSKFPNLRGADILPGGHLIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQA 157
+L N + + + + L ++ + + ++ H ML + + YR+
Sbjct: 257 QMLHQNQLHQQQQQQEAIHQNQLHHQQEVIHQNQLLQQEAIHQNQMLQQQQQQEAMYRRK 316
Query: 158 TEDK 161
TED+
Sbjct: 317 TEDE 320
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 21 EME-RKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVMSENHTKL 79
EM+ ++L + AE+ + Y D + ++ ++++ +++ + +S+NH L
Sbjct: 189 EMDPQRLAVIVAEMKR---YQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPL 245
Query: 80 NKSYLELNEMLYVLNQIGPLLGDNDM 105
+ + L E +L +I P++ D +
Sbjct: 246 VRPLIRLQEKNIILTRINPMIRDTSV 271
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 188 TRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSK 233
T++ K+ + R P E K+R I +LE+ +S L+E L K+K
Sbjct: 46 TQIPKVVADRRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAK 91
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 3 PDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENIL 62
P A YI E + +++KL Y E E + QE + QP E EN
Sbjct: 296 PSFLATMEEYIKEAPQSGSVQKKLEYQEKE---------EEEQEQEEEQPEEPAEEENQN 346
Query: 63 EKWKNDITVMSENHTKLNKSYLELNE 88
E +ND ++ E + K +E+ E
Sbjct: 347 ENTENDQPLIEEEEEE-PKEEIEVEE 371
>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1934
Score = 29.5 bits (63), Expect = 3.9
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 47 PKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDN--D 104
P A + +M+++ + +K D+ E+ K N+ + + L+ L +I P N D
Sbjct: 1075 PSAPRIRDMLSFSVLTPYYKEDVLYSEEDLNKENEDGISI---LFYLQKIYPDEWTNYLD 1131
Query: 105 MRRDSKFPNLRGADILPGGHLIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILK 164
+D K P ++ L R SY + + R RG +YYRQA E + +
Sbjct: 1132 RLKDPKLPEKDKSEFL------------REWVSYRGQTLA-RTVRGMMYYRQALELQCYQ 1178
Query: 165 DPFTGMEIRKVAFLAVCQGEE 185
+ G + F A+ +E
Sbjct: 1179 E-VAGEQAEFSVFRAMASNDE 1198
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 48 KALQPNEMIAYENILEKWKNDITVMSE-NHTKLNKSYLE 85
K+LQ +E+ E + E WK D E +H K +K Y+E
Sbjct: 166 KSLQKSEIEKGEIVGESWKKDEPTKGEFSHLKYHKGYVE 204
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 48 KALQPNEMIAYENILEKWKNDITVMSENHTKLNKS 82
K L E++ Y+ ++EKWK D+ E K+ ++
Sbjct: 824 KQLDNTELLKYKQMVEKWKQDMKGKDEQIRKMEET 858
>At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative
(ILL6) / IAA-Ala hydrolase, putative virtually identical
to gr1-protein from [Arabidopsis thaliana] GI:3559811;
similar to IAA-amino acid hydrolase GI:3421384 from
[Arabidopsis thaliana]; contains TIGRfam profile
TIGR01891: amidohydrolase; contains Pfam profile
PF01546: Peptidase family M20/M25/M40; identical to
cDNA IAA-amino acid conjugate hydrolase-like protein
(ILL6), partial cds GI:17978837
Length = 464
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 289 RVQDILVECSETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSMY 343
R+Q++L++ G + ++ PPT N Y H +V I+ GDS +
Sbjct: 339 RIQEVLMDQVGVFGCQATVNFFEKQNAIYPPTTNNDATYNHLKKVTIDLLGDSHF 393
>At1g08125.1 68414.m00891 Expressed protein
Length = 315
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 56 IAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRD 108
+ +E +L+ WK++ V + +K++ Y + + LY++ Q ++ RD
Sbjct: 186 VVHEKMLQMWKDNFEVKTIPRSKMDGEYQDPSIHLYIMAQKSAAESSGNVSRD 238
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 314 FSMSPPTFNRTNKYTHGFQVLINAYGDSMYRELNPGNPVDTHMADVDYYDRNSTDVTV 371
F +PPT N N++ GF +A DS N P + + + +D + +++ +
Sbjct: 475 FQPTPPTSNPNNEHNFGFGEAFSAVTDSEPGVQNMQAPPNLSVFPQEQFDTSQSEIDI 532
>At3g50040.1 68416.m05471 expressed protein putative protein -
Arabidopsis thaliana, EMBL:AL035601
Length = 421
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 200 NSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKA 259
N YP P + + E + + + +D L+K RCK + K+ Q+ +K
Sbjct: 89 NDYPLPGTCDDGTEFLGLPKKKTNDRWRRLTKPIMWRCKWIELKVKEIQSQARGYEKEVK 148
Query: 260 IYHTMNLFSLDITK 273
Y+ F L+ +K
Sbjct: 149 DYYLTKQFDLEKSK 162
>At1g66300.1 68414.m07529 F-box family protein contains F-box domain
Pfam:PF00646
Length = 456
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 264 MNLFSLDITKKCLIGQCWIPERDLMR-VQDILVECSETIGTNVPSFISKTTFSMSPPTFN 322
+NL + D+ K C++ W R L R V + ++CS+ T +F+S +S T +
Sbjct: 44 LNLSTKDVIKNCVLSTKW---RYLWRYVPGLDLDCSDF--TEYNTFVSFVDRFLSTNTES 98
Query: 323 RTNKYTHGF 331
NK+ GF
Sbjct: 99 YLNKFKLGF 107
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,095,505
Number of Sequences: 28952
Number of extensions: 377392
Number of successful extensions: 1013
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 24
length of query: 380
length of database: 12,070,560
effective HSP length: 82
effective length of query: 298
effective length of database: 9,696,496
effective search space: 2889555808
effective search space used: 2889555808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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