Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 126 4e-30
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 33 0.088
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 30 0.47
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 28 1.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 2.5
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 27 4.4
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 4.4
SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf... 27 4.4
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 27 5.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 5.8
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 5.8
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 126 bits (305), Expect = 4e-30
Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 1/220 (0%)
Query: 130 GVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTR 189
G++ K E +LWR RGN++ Q D L E K FL + G ++ R
Sbjct: 178 GIIPTVKFQFLERILWRTLRGNLFIHQVRADDSLIHGAEKNE-EKTIFLVIAHGTQILLR 236
Query: 190 MEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQN 249
+ KI +P E A R I Q +SDL +L ++ L + +
Sbjct: 237 IRKISESLGATLFPVEEDAPGRTSQIQQANVSISDLNAVLENTRSALYTELTFIAEHISA 296
Query: 250 GIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWIPERDLMRVQDILVECSETIGTNVPSFI 309
+ K K ++ MNLF+ D KCLI + W P +L VQ L S+ + P+ +
Sbjct: 297 WEAVLHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL 356
Query: 310 SKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSMYRELNPG 349
+ S PPT+ R NK+T GFQ +I++YG + YRE+N G
Sbjct: 357 NVVHTSEQPPTYFRVNKFTEGFQSIIDSYGIATYREVNHG 396
Score = 54.0 bits (124), Expect = 3e-08
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
+NPDV AFQR+++ E+ R + ER LRY+ +E+ + I+VPD P E E+
Sbjct: 15 LNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLPPSYESVLESSTIED 74
Query: 61 ILE---KWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGA 117
I+E + + + + E+ L YL+ E VL + + D N +
Sbjct: 75 IIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKSGNTVDPLRNNYETS 134
Query: 118 DILPG 122
I G
Sbjct: 135 SIFSG 139
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.7 bits (71), Expect = 0.088
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 184 EELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTV 243
+E S +EK+ S F E KE E+ LE + SDLE +L + + K +
Sbjct: 295 DESSEDLEKLHSNFA-------EKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDL 347
Query: 244 GKQWQNGIVQVKKAKAIYHTM 264
GK Q I ++K K TM
Sbjct: 348 GK-IQGEIESLEKLKVKKSTM 367
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 30.3 bits (65), Expect = 0.47
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
++P+ +TEVC LR L +Y+ V KAL+ N + N
Sbjct: 370 LDPEFTDIFLGVLTEVCLDPSQPYTLR------LSGAMYIGSYVARAKALEKNTIQIIVN 423
Query: 61 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQ 95
++ +W EN +L+ L + + Y +NQ
Sbjct: 424 MMTRWVEAYLDQCEN--ELSDDLLSKHSVFYAINQ 456
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 38 IYVPDS-VQEPKALQPNEMIAYENILEKW---KNDITVMSENHTKLNKSYLELNEMLYVL 93
+Y+PD + P +P I ++ +K +ND + N+T+L + + LN + +
Sbjct: 348 LYIPDCLIGRPSEKKPKFKITGKDATKKIFGARNDYAFRASNNTELMRWWEALNTHIANV 407
Query: 94 NQIGPLLGDN 103
N I PL N
Sbjct: 408 NYIQPLSNAN 417
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 20 AEMERKLRYVEAELLKDNIYVPDS--VQEPKALQPNEMIAYENILEKWKNDITVMSENHT 77
+E E KL+ ++ + + V DS ++E LQ ++ +ILEK K D+ E T
Sbjct: 74 SEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEELT 133
Query: 78 KLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSK 110
+ + L + L+ + +R D K
Sbjct: 134 VESMEVVRLTRQVETLSTQYSIQRSQWVREDEK 166
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 282 IPERDLMRVQDILVECSET--IGTNVPSFI 309
IP+ D++RV DIL S++ +G N P I
Sbjct: 132 IPQHDMLRVSDILKTQSKSRLVGPNCPGII 161
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 33 LLKDNIYVPDSVQEPKALQPN--EMIAYENILEKWKNDITVMSENHTKLNKSYLELNEML 90
LL D+ + + K +P+ E N+L +W + + + S ++ + K ++ +L
Sbjct: 164 LLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISYAQTEKQEAKVTPLL 223
Query: 91 YVLNQIGPLLGDNDMRR 107
++N LL RR
Sbjct: 224 AIINMSLVLLSAFPTRR 240
>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 222 MSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQ-VKKAKAIYHTMNLFSLDI 271
+ DL+ I K+ + TL TVG Q+ G+V+ +KK A+ N +D+
Sbjct: 32 IGDLKIIKEKNSEKKKATL-TVGNQYMEGVVESLKKPLAVLQKTNADPVDV 81
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 147 VSRG-NIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCP 205
++RG ++Y+R T +K PF+ ++R ++ + TR + VN+Y C
Sbjct: 150 LTRGYDLYFRPVTRNK---KPFSVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTCD 206
Query: 206 ESAKERLEMISQ 217
E + I Q
Sbjct: 207 RCGYEVFQEIRQ 218
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.6 bits (56), Expect = 5.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 212 LEMISQLETRMSD---LEEILSKSKYIRCKTLRTVGKQW---QNGIVQVKKAKAIYHTMN 265
+E++S+LE S+ LEE+ +IR Q NG +KKA + +
Sbjct: 12 VELLSRLEGCPSEKVLLEELRKLRGFIRNDIPSNFFPQLFITDNGFAAIKKAVTKLNFQS 71
Query: 266 LFSLDITKKCL 276
L SLDI + CL
Sbjct: 72 LLSLDIFECCL 82
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/93 (20%), Positives = 41/93 (44%)
Query: 13 ITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVM 72
++++ A + +K + EA LL+ V + + + N +L + +
Sbjct: 262 VSKLLHQANVNKKTKSREAALLRARAVVKKKERGKQNVPTNVNFPALQLLHDPQGFAEEL 321
Query: 73 SENHTKLNKSYLELNEMLYVLNQIGPLLGDNDM 105
E H +KS L +++ L VL + L+G + +
Sbjct: 322 FEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKL 354
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,523
Number of Sequences: 5004
Number of extensions: 76110
Number of successful extensions: 239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 12
length of query: 380
length of database: 2,362,478
effective HSP length: 74
effective length of query: 306
effective length of database: 1,992,182
effective search space: 609607692
effective search space used: 609607692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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