Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 186 3e-47
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 183 2e-46
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 172 5e-43
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 32 0.66
09_01_0051 - 862286-864670 32 0.88
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 29 4.7
08_02_1546 + 27793682-27793875,27794167-27794245 29 6.2
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 29 6.2
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005... 29 6.2
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 29 8.2
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 29 8.2
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 186 bits (453), Expect = 3e-47
Identities = 111/349 (31%), Positives = 184/349 (52%), Gaps = 22/349 (6%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
+N D FQR Y +++ RC EM RKLR+ ++ K I +L+ +++ E
Sbjct: 50 LNADKSPFQRTYASQIKRCGEMARKLRFFREQMSKAAIATSTQFSGT-SLEIDDL---EV 105
Query: 61 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGADIL 120
L + + ++T ++ N+ KL ++Y EL E VL + +M D G+
Sbjct: 106 KLGELEVELTEVNANNDKLQRTYNELVEYNIVLQK--------EMVTDPSKQVKLGS--- 154
Query: 121 PGGHLIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAV 180
+ G+V + K+ FE +L+R +RGN++ RQ D+ + DP +G ++ K AF+
Sbjct: 155 -------LSGLVPKEKAMAFERILFRATRGNMFLRQEPVDETVTDPLSGEKVIKNAFVIF 207
Query: 181 CQGEELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTL 240
GE +++ KI F N YP PE ++L+ I ++ ++S+L+ + R L
Sbjct: 208 YSGERAKSKIVKICDAFGANRYPFPEDLGKQLQTIQEVSGKISELKATIEIGLAHRDSIL 267
Query: 241 RTVGKQWQNGIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWIPERDLMRVQDILVECSET 300
+ + +++ VKK KAIYHT+N+ SLD+TKKCL+ + W P ++QD L +
Sbjct: 268 KNISSEFEQWNTLVKKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFATSQIQDALQRATVD 327
Query: 301 IGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSMYRELNPG 349
+ V S SPPTF +TNK+T FQ +++AYG + Y+E NPG
Sbjct: 328 SKSQVGSIFQVLNTQESPPTFFQTNKFTSAFQEIVDAYGIAKYQEANPG 376
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 183 bits (446), Expect = 2e-46
Identities = 111/367 (30%), Positives = 185/367 (50%), Gaps = 22/367 (5%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYEN 60
+N D FQR Y ++ RC EM RKLR+ + ++ K I + E +L +++ E
Sbjct: 51 LNADKSPFQRTYAAQIKRCGEMARKLRFFKEQMSKAGISTSAQLTEI-SLDFDDL---EI 106
Query: 61 ILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPL--------------LGDNDMR 106
L + + ++ ++ N+ KL ++Y EL E VL + G + N
Sbjct: 107 KLGELEAELAEVNANNEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQREMEANQSG 166
Query: 107 RDSKFPNLRGADILPGGHLIV----MPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKI 162
S L D L V + G+V + K+ FE +L+R +RGNI+ RQ + D+
Sbjct: 167 ESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQESVDEP 226
Query: 163 LKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRM 222
+ DP +G ++ K AF+ G+ ++ KI F N YP PE +L + ++ ++
Sbjct: 227 VTDPVSGEKVAKNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLHAVQEVSAKI 286
Query: 223 SDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWI 282
S+L+ + R L+ + +++N K K IYHT+N+ S+D+TKKCL+G+ W
Sbjct: 287 SELKATIDMGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWS 346
Query: 283 PERDLMRVQDILVECSETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSM 342
P ++QD L + + V S + SPPT+ +TNK+T FQ +++AYG +
Sbjct: 347 PVFATTQIQDALQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAK 406
Query: 343 YRELNPG 349
Y+E NPG
Sbjct: 407 YQEANPG 413
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 172 bits (418), Expect = 5e-43
Identities = 113/369 (30%), Positives = 188/369 (50%), Gaps = 39/369 (10%)
Query: 1 MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPN-EMIAYE 59
+N D FQR ++ +V RC+EM RKLR+ ++ K V SV+ A+QP+ ++ E
Sbjct: 48 LNEDKSPFQRIFVNQVKRCSEMSRKLRFFNDQINKAG--VKSSVRP--AMQPDIDLEELE 103
Query: 60 NILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRR------------ 107
L + +ND+ M+ N KL ++Y EL E VL++ G +L +
Sbjct: 104 AKLREHENDLLEMNTNSEKLLQTYNELLEFKMVLSKAGGILASSHNHAAPAERELDEHIY 163
Query: 108 DSKFPNLRGADILPGGHLIV--------MPGVVRRSKSYHFEMMLWRVSRGNIYYRQATE 159
D + + + G HL + G++ +SK+ FE ML+R +RGN+++ QA
Sbjct: 164 DKEMDDGNAYLLEQGVHLGASENSGVKFVSGIILKSKAMAFERMLFRATRGNMFFNQAPA 223
Query: 160 DKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLE 219
+ + DP +G EE ++ KI F + YP PE ++ ++ ++
Sbjct: 224 GEPVTDPISG--------------EEAKAKILKICGSFGASCYPVPEEMVKQRQIFREVS 269
Query: 220 TRMSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKAIYHTMNLFSLDITKKCLIGQ 279
R++DLE L R K L +VG Q + VKK KA+Y T+N+ + D+TKKCL+G+
Sbjct: 270 GRLADLEATLDAGIQHRNKALESVGSQLWRWTIMVKKEKAVYDTLNMLNFDVTKKCLVGE 329
Query: 280 CWIPERDLMRVQDILVECSETIGTNVPSFISKTTFSMSPPTFNRTNKYTHGFQVLINAYG 339
W P +++D+L + + V + SPPT+ +T+K+T+ FQ +++AYG
Sbjct: 330 GWCPIFAKSQIKDVLQRATLHSNSQVGIIFHEMDTIDSPPTYFQTDKFTNAFQEIVDAYG 389
Query: 340 DSMYRELNP 348
+ Y E NP
Sbjct: 390 IARYEEANP 398
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 32.3 bits (70), Expect = 0.66
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 131 VVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRM 190
VV R+K E+ +RVS G Y Q E+++L++ E + E LS+
Sbjct: 2681 VVARTKE---ELARYRVSDGKDPYEQMEEEELLRNRLEESEQDRSKL-----AENLSSLC 2732
Query: 191 EKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTL 240
+ V ++ S + LE ++Q++ R++ +E + K ++CK L
Sbjct: 2733 ATVLKIAGVRNHESDASLLKALEALNQIQLRIASMEAGVEDLK-LKCKLL 2781
>09_01_0051 - 862286-864670
Length = 794
Score = 31.9 bits (69), Expect = 0.88
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 247 WQNGIVQVKK---AKAIYHTMNLFSLDITKKC---LIGQ-CWIPERDLMRVQDILV 295
W G+ QV++ A I+HT+ F +DIT C LI CW +R+L DI++
Sbjct: 682 WLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCW--DRNLNAAVDIML 735
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 29.5 bits (63), Expect = 4.7
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 36 DNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQ 95
D++ + +++ P L+ +IA + I W + V H LN SY E L +
Sbjct: 544 DSLALELNLEFPVRLENPHVIASDQI---WVGVVPVGPSGHP-LNSSY-RTRETLKYKQE 598
Query: 96 IGPLLGDNDMRRDSKFPNLRGADILPGGHLIVMP 129
+G +G R + PN+ A I+P G L+ P
Sbjct: 599 LGITIG-----RQLRTPNINFARIVPDGLLVFFP 627
>08_02_1546 + 27793682-27793875,27794167-27794245
Length = 90
Score = 29.1 bits (62), Expect = 6.2
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 209 KERL-EMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKA 259
+ERL ++ QL+T+++++E I+ K Y+ L G W + I +K KA
Sbjct: 21 EERLMAVMEQLDTKVNEME-IIGKQVYMIASKLEQQGSGWTSCIPSLKLDKA 71
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 29.1 bits (62), Expect = 6.2
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 53 NEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLG-DNDMRR---- 107
N+ + NI K N+ ++ N + L + Y N+IGPL G D M R
Sbjct: 440 NDNVTNNNIGLKSGNNASLNINNKSSLKPLEKSVLPEQYSANRIGPLQGADGSMMRSDSS 499
Query: 108 -------DSKFPNLRGADILPGGHLI----VMPGVVRRSKSYHFEMMLWRVSRGN 151
D +L G +L GG I V+ G + K +L++V G+
Sbjct: 500 ISTARKGDKIIADLAGVQVLKGGENIQDENVLDGAYSQKKKCSISPVLFKVQNGD 554
>02_04_0597 -
24198112-24198462,24199249-24199389,24200322-24200537,
24200626-24201561,24201655-24201816,24202026-24202304,
24202399-24203171,24206142-24207363
Length = 1359
Score = 29.1 bits (62), Expect = 6.2
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 292 DILVECSETIGTNVPSFISKTTFSMSPPTFNRTNK--YTHGFQVLINAYGDSMYRELNPG 349
DI+VEC + P+++S + S + P N + + L + Y L PG
Sbjct: 557 DIMVECCQP-SEERPAYVSSSASSKTSPDSNGASSPPELNVEGELTECAFSNKYERLKPG 615
Query: 350 NPVDTHMADVDYYDRNSTDVTVKLQHET 377
N H V D+ + D+ ++ ++
Sbjct: 616 NDDIHHRLSVQNTDKCTNDIPARVLEQS 643
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 28.7 bits (61), Expect = 8.2
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 72 MSENHTKLNKSYLELNEMLYVLNQIGPLLGDND--MRRDSKFPNLRGADILPGGHLIVMP 129
+S+NH + + + L E +L +I PL+ D +R + +LR I G +
Sbjct: 220 LSDNHQPMTRPVIRLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVY 279
Query: 130 GVVRRSKSYHFEMMLWRV 147
+ Y EM WR+
Sbjct: 280 VCTMAERDYALEM--WRL 295
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 154 YRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTRMEKIFS 195
Y+ TED +L+D + G + V G L+ + +IFS
Sbjct: 271 YKDVTEDSLLEDAYFGSRLPVVNLRLAQGGVRLAATLNRIFS 312
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,721,222
Number of Sequences: 37544
Number of extensions: 427222
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 15
length of query: 380
length of database: 14,793,348
effective HSP length: 83
effective length of query: 297
effective length of database: 11,677,196
effective search space: 3468127212
effective search space used: 3468127212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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