GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)                 232   3e-61
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   31   1.6  
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)                    29   6.3  
SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)             29   6.3  
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)                 29   6.3  
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   29   6.3  
SB_20999| Best HMM Match : Mod_r (HMM E-Value=0.042)                   29   6.3  
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           29   8.3  

>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
          Length = 1128

 Score =  232 bits (568), Expect = 3e-61
 Identities = 103/219 (47%), Positives = 151/219 (68%)

Query: 130 GVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQGEELSTR 189
           GV+ R K   FE +LWR  RGN++++QA  ++ L+DP TG ++ K  F+   QG++L +R
Sbjct: 205 GVISREKVPSFERLLWRACRGNVFFKQAEIEEALEDPSTGDQVHKCVFIIFFQGDQLKSR 264

Query: 190 MEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQN 249
           ++KI  GFR + YPCPE+A ER E+   +ETR+ DL+ +LS++K  R + L TV      
Sbjct: 265 VKKICEGFRASLYPCPETAAERREVAIGVETRIEDLQNVLSQTKDHRYRLLGTVANNISQ 324

Query: 250 GIVQVKKAKAIYHTMNLFSLDITKKCLIGQCWIPERDLMRVQDILVECSETIGTNVPSFI 309
             ++VKK KAIYHTMN+F+LD+T+KCLI +CW P  DL R+Q  L   +E  G +VPS +
Sbjct: 325 WFIKVKKIKAIYHTMNMFNLDVTQKCLIAECWCPVADLDRIQAALRRGTEHSGASVPSIL 384

Query: 310 SKTTFSMSPPTFNRTNKYTHGFQVLINAYGDSMYRELNP 348
           ++     +PPTFNRTNK+T GFQ +++AYG + Y+E+NP
Sbjct: 385 NRMVTRQAPPTFNRTNKFTQGFQAIVDAYGVANYQEVNP 423



 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 29/59 (49%), Positives = 40/59 (67%)

Query: 1   MNPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYE 59
           +NPDV AFQR ++ EV RC EMERKLR+++ E+ K  I + D+ +  +A  P EMI  E
Sbjct: 106 LNPDVNAFQRKFVNEVRRCEEMERKLRFLQKEIEKAEIAMVDTGESSEAPHPREMIDLE 164


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 18  RCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENILEKWKNDITVMSENHT 77
           R  EM++K+R +EA L +D      S++  +    ++ +A +N +EK + DI+    +  
Sbjct: 242 RLGEMQQKIRRLEA-LCQDFKKEHSSLKNERDHWKDQALANKNEIEKLRGDISKQFSDAD 300

Query: 78  KLNKSYLELNEMLYVLNQIGPLLGDNDMRRD 108
           ++     +  + +  L +   L G+ + R+D
Sbjct: 301 EIQSELGKTKQEMLALQKELFLSGEREKRKD 331


>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 73  SENHTKLNKSYLELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGADILPGGHL 125
           S N +  +++     + L V++QI P    N+ R  +K P +RG DI+   HL
Sbjct: 20  SWNPSLFSRTARSFLQKLPVVSQISPFSMSNE-RHVNKIPTIRGTDIMRDSHL 71


>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 185 ELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLET 220
           +L++R E+ +  F VN   C +SA +RL+++SQL T
Sbjct: 154 DLASR-EQHWRSFEVNVESCTDSASDRLQLLSQLCT 188


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 14/67 (20%), Positives = 36/67 (53%)

Query: 202  YPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQWQNGIVQVKKAKAIY 261
            Y  P+S ++ +  + ++ET  ++ E    K   + C+ +RT+ +Q +  + + ++ +  Y
Sbjct: 1284 YGVPKSPEDLIAFMGEVETCYTETEGEGGKPIILHCRMVRTLRQQRKYMVQKKEQYEMCY 1343

Query: 262  HTMNLFS 268
             T+  F+
Sbjct: 1344 RTIAFFA 1350


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 42  DSVQEPKALQPNEMIAYENILEKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLG 101
           D+V       PN +IA   +LE WK    ++ +    L   Y +++  ++       LLG
Sbjct: 928 DTVNSAAQDDPNSIIAGMPVLEVWKAKQVIIMKR--TLGTGYADVDNPVFFKENTNMLLG 985

Query: 102 DNDMRRDSKFPNLR 115
           D  +  D+    +R
Sbjct: 986 DAKVMCDTLLSKIR 999


>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
          Length = 734

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 319 PTFNRTNKYTHGFQVLINAYGDSMYRELNPGNPVDTHMADVDYYD 363
           P  N T  Y H F  ++  YG  +++ L+ GN     ++D+D  D
Sbjct: 58  PEDNATRIYVHPFDSVLFVYGSQVWKSLDGGNSFH-QVSDLDSDD 101


>SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)
          Length = 365

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 125 LIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQ-G 183
           ++V  G   R KS +    +W      I      ED  L DP T   +        C   
Sbjct: 13  VVVNAGKWSRKKSNY--KWIWLALPDGIEVESEDEDSTLSDPDTVSTVSTSDTKESCDVA 70

Query: 184 EELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTV 243
           +      EKI  G       C E  +E  +MIS+++  +     +  K +  + KT++  
Sbjct: 71  KSFEDEREKIEDGVAT----CEEEQEESEKMISEMKWTVLATTRLSQKVEKGKMKTVQRK 126

Query: 244 GK 245
           GK
Sbjct: 127 GK 128


>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
          Length = 459

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 206 ESAKERLEMISQLETRMSDLEE-ILSKSKYIRCKTLRTVG----KQW-QNGIVQVKKAKA 259
           +S  + L+ +S L+   SD+ + IL K   +   +LR++     KQ   NG+V + K ++
Sbjct: 207 QSLGKNLKSLSFLDISRSDITDVILLKFAEVPTLSLRSIDLSACKQLTDNGVVSLVKNQS 266

Query: 260 IYHTMNLFSLDITKKCLI 277
              T+ L  LDIT   +I
Sbjct: 267 KIETLKLCCLDITNTSVI 284


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 125 LIVMPGVVRRSKSYHFEMMLWRVSRGNIYYRQATEDKILKDPFTGMEIRKVAFLAVCQ-G 183
           ++V  G   R KS +    +W      I      ED  L DP T   +        C   
Sbjct: 13  VVVNAGKWSRKKSNY--KWIWLALPDGIEVESEDEDSTLSDPDTVSTVSTSDTKESCDVA 70

Query: 184 EELSTRMEKIFSGFRVNSYPCPESAKERLEMISQLETRMSDLEEILSKSKYIRCKTLRTV 243
           +      EKI  G       C E  +E  +MIS+++  +     +  K +  + KT++  
Sbjct: 71  KSFEDEREKIEDGVAT----CEEEQEESEKMISEMKWTVLATTRLSQKVEKGKMKTVQRK 126

Query: 244 GK 245
           GK
Sbjct: 127 GK 128


>SB_20999| Best HMM Match : Mod_r (HMM E-Value=0.042)
          Length = 193

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 63  EKWKNDITVMSENHTKLNKSYLELNEMLYVLNQIGPLLGDND 104
           E W ND+    +++ +L +S  ELNE+L   +++  ++   D
Sbjct: 65  ESWVNDLREKDKHNRQLQRSVDELNELLEEADKLKDVVSQKD 106


>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 2   NPDVQAFQRNYITEVCRCAEMERKLRYVEAELLKDNIYVPDSVQEPKALQPNEMIAYENI 61
           +P  + F+    + VCR   ++    + +A+L KD +     +Q+ K    +++  Y   
Sbjct: 78  SPVQRRFENEQSSPVCRSPSLDLGSSFDDAQLFKDRL---GRLQQDKEQLSSQLSHYRQA 134

Query: 62  LEKWKNDITVMSENHTKLNKSYLELNEML 90
            +  K D+       ++L+    E  +++
Sbjct: 135 CDAAKTDLAAEKVTSSRLHNELREAKQVI 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,541
Number of Sequences: 59808
Number of extensions: 525659
Number of successful extensions: 1368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 13
length of query: 380
length of database: 16,821,457
effective HSP length: 83
effective length of query: 297
effective length of database: 11,857,393
effective search space: 3521645721
effective search space used: 3521645721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)