GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000489-TA|BGIBMGA000489-PA|IPR002490|ATPase, V0/A0
complex, 116-kDa subunit
         (380 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.3  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   3.3  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.6  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 85  ELNEMLYVLNQIGPLLGDNDMRRDSKFPNLRGADILPGGHLIVMPGVVRRSKSYHFEMML 144
           EL +     N +  L   ND    ++F  L    +LP G +  M     R ++     +L
Sbjct: 54  ELYQKARTFNLVENLDNYNDKEAVNEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLL 113

Query: 145 WRVSRGNIYYRQA 157
           +     +++Y  A
Sbjct: 114 YSAKTFDVFYNTA 126


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 190 MEKIFSGFRVNSYPCPESAKERL-EMISQLETRMSDLEEILSKSKYIRC 237
           +EK+ SG R  +   P+   E + E+I Q  ++ +D +E +   KYI C
Sbjct: 73  VEKLESGTRELT---PDDFTEDVHEIIEQCVSKAADEDECMVARKYIDC 118


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 190 MEKIFSGFRVNSYPCPESAKERL-EMISQLETRMSDLEEILSKSKYIRC 237
           +EK+ SG R  +   P+   E + E+I Q  ++ +D +E +   KYI C
Sbjct: 73  VEKLESGTRELT---PDDFTEDVHEIIEQCVSKAADEDECMVARKYIDC 118


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 212 LEMISQLETRMSDLEEILSKSKYIRCKTLRTVGKQW 247
           LE +  L   +SD + IL ++K+     ++T+G  +
Sbjct: 811 LECLRFLNEVISDFDAILDQNKFKDIIKIKTIGSTY 846


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,809
Number of Sequences: 429
Number of extensions: 4640
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 380
length of database: 140,377
effective HSP length: 59
effective length of query: 321
effective length of database: 115,066
effective search space: 36936186
effective search space used: 36936186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)