Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000488-TA|BGIBMGA000488-PA|undefined
         (239 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    29   0.042
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.17 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    27   0.17 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.17 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    27   0.17 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    27   0.17 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.17 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.17 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.30 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.1  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    23   2.8  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   6.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 0.042
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDTT 215
           +P ++ST+   + PA  TT
Sbjct: 145 SPLSVSTSPPGK-PATSTT 162



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 145 SPLSVSTSPPGK-PATST 161



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 145 SPLSVSTSPPGK-PATST 161



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 145 SPLSVSTSPPGK-PATST 161



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 145 SPLSVSTSPPGK-PATST 161



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 43  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 100

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 101 SPLSVSTSPPGK-PATST 117



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 68  SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 116


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 145 SPLSVSTSPPGK-PATST 161



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTALSNRHPAEDT 214
           +P ++ST+   + PA  T
Sbjct: 145 SPLSVSTSPPGK-PATST 161



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 187 SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
           S  D S     P++ +  LS    +  T        + ++ +PPG+PA S
Sbjct: 112 SPQDLSTNGAPPRS-TPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATS 160


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 139 QYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP-LNVKDLETRT-SQSDKSQGAT 196
           Q PN  TH  P A            + +P  L     P  +   L T + S + KS G T
Sbjct: 87  QSPNTQTH--PSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLT 144

Query: 197 TPKTISTA 204
           +P ++ST+
Sbjct: 145 SPLSVSTS 152


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 213 DTTLDFSYDNMGMNVTPPGQPAASHKF 239
           D T+ +  D   M   PPG PA  +++
Sbjct: 418 DGTMGYMMDGQQMMHRPPGDPAFHNQY 444


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 15  SAQITLDGIRCGQLICQLDEYCSPE 39
           + +   DGI C Q  C  D+ C+ +
Sbjct: 101 TGRCAFDGICCSQDSCHADKSCASD 125


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 123 WRYLKQKFQPAKNRVKQYPNDL 144
           W  L++KF P     K+Y N L
Sbjct: 96  WEQLQKKFDPQGIYKKRYQNYL 117


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 150 HAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKS 192
           H     P P ++ +I NP P   +    N     T +++ + S
Sbjct: 402 HCGVNVPVPPMQSQIINPQPQITSPSNTNTSTSSTNSNKPNSS 444


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,657
Number of Sequences: 317
Number of extensions: 2543
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 239
length of database: 114,650
effective HSP length: 55
effective length of query: 184
effective length of database: 97,215
effective search space: 17887560
effective search space used: 17887560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)