Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000488-TA|BGIBMGA000488-PA|undefined
(239 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22520.1 68416.m02846 expressed protein 33 0.13
At2g14920.1 68415.m01697 sulfotransferase family protein similar... 32 0.40
At4g26450.1 68417.m03805 expressed protein 31 0.69
At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family... 31 0.91
At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,... 29 2.1
At5g01400.1 68418.m00053 expressed protein contains low similari... 29 2.8
At5g13260.1 68418.m01523 expressed protein 29 3.7
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At5g22480.1 68418.m02623 zinc finger (ZPR1-type) family protein ... 28 4.9
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 28 4.9
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 27 8.5
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 27 8.5
At4g19150.1 68417.m02825 ankyrin repeat family protein contains ... 27 8.5
At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putativ... 27 8.5
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam... 27 8.5
At3g56660.1 68416.m06301 bZIP transcription factor family protei... 27 8.5
At3g10490.2 68416.m01259 no apical meristem (NAM) family protein... 27 8.5
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv... 27 8.5
At2g13550.1 68415.m01494 expressed protein 27 8.5
>At3g22520.1 68416.m02846 expressed protein
Length = 600
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 138 KQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLET-RTSQSDKSQGAT 196
K+ ++ ++ +A+ K R P P +T +P+ K T R S + K +GAT
Sbjct: 213 KEVQTEVGQNDENAQDGKGNSRYSQRKRKPMPTPQTYEPVEAKPKSTPRGSSNKKKKGAT 272
Query: 197 TPKT 200
TP T
Sbjct: 273 TPAT 276
>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420004; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 333
Score = 31.9 bits (69), Expect = 0.40
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 131 QPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPD 168
Q +K+ ++ + + L HHNPH P + +L L+ PD
Sbjct: 91 QRSKHSLEDHQHPLLHHNPHEIVPNLELDLYLKSSKPD 128
>At4g26450.1 68417.m03805 expressed protein
Length = 1248
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 146 HHNPHAEAPKPKPELKLEIRNPDPLRR----TNQPLNVK-----DLETRTSQSDKSQGAT 196
HH +EA P PE+ + N + L T L VK DLE+ T+QS S G T
Sbjct: 1012 HHEQVSEANSPHPEIVTLVNNVEQLENMLEETRSMLEVKESHIRDLESTTNQSKHSWGGT 1071
>At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family
protein
Length = 126
Score = 30.7 bits (66), Expect = 0.91
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 144 LTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPL 177
+T NP + P+P PE + +P P TN+P+
Sbjct: 21 ITTSNPESSPPRPFPESSRKHDSPPPRASTNEPM 54
>At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,
putative (RPL27) identical to SP|Q9FLN4 ribosomal
protein L27, chloroplast precursor {Arabidopsis
thaliana}; similar to SP|P30155 50S ribosomal protein
L27, chloroplast precursor (CL27) {Nicotiana tabacum}
Length = 198
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 128 QKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTN 174
+KF P + ++ YP ++ NP++ + + +L+ R RR N
Sbjct: 127 EKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQ-REKKKARREN 172
>At5g01400.1 68418.m00053 expressed protein contains low similarity to
symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 144 LTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTIST 203
LT H E P L + P + Q V+ ET+TSQ + Q A+ P+ S
Sbjct: 1219 LTAHASQPEIQSSLPRSTLAVLGLVPDSQGTQTSQVQANETQTSQEQQQQQASEPQQTSQ 1278
Query: 204 ALSNRHPAEDTTLD 217
+ P + +D
Sbjct: 1279 SQQVSVPLSHSQVD 1292
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 148 NPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQ 188
NP + KPKP + P + R++ P N + R SQ
Sbjct: 105 NPSSTIAKPKPVASSAVVPPPKISRSSSPANSPAVSVRASQ 145
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 132 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP 169
P N V QYP HH P P P + L+ P P
Sbjct: 59 PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 132 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP 169
P N V QYP HH P P P + L+ P P
Sbjct: 59 PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96
>At5g22480.1 68418.m02623 zinc finger (ZPR1-type) family protein
contains Pfam doamin, PF03367: ZPR1 zinc-finger domain
Length = 493
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 148 NPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKT 200
NPHA +P P +K R P+ N ++ QS+ S GA + KT
Sbjct: 193 NPHAPSPDPSLTIKFYERTPEQQATLGYVAN----PSQAGQSEGSLGAPSTKT 241
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 139 QYPNDLTHHNPHAEAP-KPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATT 197
QY N L NP + P+L+ ++NPD LR+ + P ++ + T Q SQ T
Sbjct: 405 QYMNQLMSLNPQLRSMLDSNPQLREMMQNPDFLRQFSSPEMMQQM--MTLQQSLSQNRNT 462
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 127 KQKFQPAKNRVKQYPNDLTHHNP---HAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLE 183
+++ QP + ++ N+ T ++ E +PK E+++E P PL T+ L + ++
Sbjct: 331 QEEEQPEEPAEEENQNENTENDQPLIEEEEEEPKEEIEVEEAKPSPLIDTDDLLGLHEIN 390
Query: 184 TRTSQSDKS 192
+ ++ +++
Sbjct: 391 PKAAEIEQN 399
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 23 IRCGQLICQLDEYCSPETNRCAPCNVVCNKT 53
+ CG ++C+ +CS +RC C + N+T
Sbjct: 4673 VPCGHVLCR---HCSTSVSRCPFCRLQVNRT 4700
>At4g19150.1 68417.m02825 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 243
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 142 NDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQS----DKSQGATT 197
N L A K E K EI P+ +VKDL+ + S+ ++ + ++
Sbjct: 163 NFLEECEEQARKAKVNNEKKTEIVKPESCSNEG---DVKDLKRKDSEDGNEGEEEEASSK 219
Query: 198 PKTISTALSNRHPAEDTTLD 217
PK ALS+ +DT D
Sbjct: 220 PKKPKVALSHLQDIDDTEAD 239
>At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putative /
coproporphyrinogenase, putative / coprogen oxidase,
putative
Length = 233
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 133 AKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQP---LNVKDLETRTSQS 189
+ +R+K PN T+H P + +P +L+ + + T +P L V D + +T S
Sbjct: 19 SSHRLKSSPNYFTYHFPRS-VKRPHFDLRCSVSIEKEVPETERPFTFLRVSDGD-QTQSS 76
Query: 190 DKSQGATTPKTISTA 204
S A K I TA
Sbjct: 77 SYSVRARFEKMIRTA 91
>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus CA
donor splice site at exon 1 and TA acceptor splice site
at exon 2
Length = 445
Score = 27.5 bits (58), Expect = 8.5
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 124 RYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLE 183
+ +++ P N ++ PN T +PH P +L P R PL VKD
Sbjct: 366 KVVQETIDPNAN-IEFRPN--TEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFR 422
Query: 184 TRTSQSDK---SQGATTPKTIS 202
R K S ATT KT S
Sbjct: 423 QRVFGDQKEGSSAAATTTKTTS 444
>At3g56660.1 68416.m06301 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: PF00170
bZIP transcription factor
Length = 620
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 180 KDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTTLDFS---YDNMGMNVTPPGQPAAS 236
+D ET+ + KS ATT KT+S AL T D S Y G ++ G AS
Sbjct: 399 RDSETKNEEG-KSVLATTTKTLSPALPLPDSTSPRTRDVSKHLYSETGKGLSSSGSDDAS 457
Query: 237 H 237
+
Sbjct: 458 N 458
>At3g10490.2 68416.m01259 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 451
Score = 27.5 bits (58), Expect = 8.5
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 126 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLR--RTNQPLNVKDLE 183
LK + N + L E P+P L P PL + + +
Sbjct: 264 LKPEEHNNNNNYDENEETLKREQMEEEERPPRPVCVLNKEAPLPLLQYKRRRQSESNNNS 323
Query: 184 TRTSQSDKSQGATTPKTISTALSNRHPAEDTT----LDFSYDNMGMNVTPPGQPAASHK 238
+R +Q S TT +T +S+ A +T L+FS + P QP HK
Sbjct: 324 SRNTQDHCSSTTTTVDNTTTLISSSAAATNTAISALLEFSLMGISDKKEKPQQPLRPHK 382
>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 633
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 193 QGATTPKTISTALSNRHP---AEDTTLDFSYDNMGMNVTP 229
Q + T + +S A S+ A DTTLD Y G+NV P
Sbjct: 72 QSSVTAQVVSEARSHSASTTCANDTTLDQIYTKNGLNVKP 111
>At2g13550.1 68415.m01494 expressed protein
Length = 181
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 125 YLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLET 184
+L +FQP +Q + H+P +P P+ E I +P+ R + L+T
Sbjct: 14 HLPTQFQPNTRTGRQPKSPPNSHHPDESSPSPQQE--RHITRSEPITR-----GIHQLKT 66
Query: 185 RTSQSDKSQGAT 196
+S + +Q T
Sbjct: 67 TSSSTANTQNTT 78
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,892,495
Number of Sequences: 28952
Number of extensions: 239219
Number of successful extensions: 639
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 20
length of query: 239
length of database: 12,070,560
effective HSP length: 79
effective length of query: 160
effective length of database: 9,783,352
effective search space: 1565336320
effective search space used: 1565336320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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