Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000488-TA|BGIBMGA000488-PA|undefined
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 36 0.005
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.11
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 31 0.20
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.45
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha... 27 1.8
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.8
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 2.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 3.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 4.2
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 4.2
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 4.2
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 4.2
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 5.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.6
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 5.6
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 25 7.4
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 9.8
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 141 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKT 200
P N E+P KP + + +P P+ TN+ + D++T + D P
Sbjct: 203 PTQGASSNVTPESPPEKP-IPSFVLSPPPVSATNEANKLSDIQTSSPSQDIPAKHLEPLH 261
Query: 201 ISTALSNRHPAEDTTLDFSYDN 222
++ +LS+ +ED+ L S D+
Sbjct: 262 LNRSLSSSPSSEDSDLSLSSDS 283
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 186 TSQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
T S TTP TIST+LS+ P + F Y ++ NVT ++S
Sbjct: 514 TQSYSTSSNFTTPITISTSLSS-FPTTIVSSSFQYSSLSSNVTTTNAQSSS 563
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 126 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETR 185
L + + +K + Q+ N H+E + K E+K E + P+ +++ + + +
Sbjct: 181 LAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPE-IKKQEGGSSTEKVGQP 239
Query: 186 TSQSDKSQGATT 197
+S DK++G+T+
Sbjct: 240 SSSDDKAKGSTS 251
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 29.5 bits (63), Expect = 0.45
Identities = 20/99 (20%), Positives = 44/99 (44%)
Query: 138 KQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATT 197
K+ T ++P A ELKL + PD + + + ++ ++ R+ ++ + +
Sbjct: 382 KELSPQATLNSPIQSAEAGNVELKLHPQTPDRIVKVERKVHSLNMTLRSPKAGSAGKENS 441
Query: 198 PKTISTALSNRHPAEDTTLDFSYDNMGMNVTPPGQPAAS 236
++ + A+ T SYD G ++ P + +AS
Sbjct: 442 WRSKYLSEGKNSKAKYTAKQPSYDRAGSSLASPTKSSAS 480
>SPBC21.04 |med8|sep15|mediator complex subunit
Med8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 123 WRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP----LRRTNQPLN 178
W + + F +++ N+L H+ + P L+ ++ +P L RT
Sbjct: 43 WPTIHKNFNILLSQIHSLSNNLAAHSHTLQTTSIYPSLEFPVKEQEPLLTTLLRTKALPE 102
Query: 179 VKDLETRTSQSDKSQGATTPK 199
V++ E T Q ++ ++ PK
Sbjct: 103 VEEWEANTLQEYEASISSQPK 123
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 137 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRT 173
V+ PND P P P P++K++ R P R T
Sbjct: 9 VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLT 45
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 203 TALSNRHPAEDTTLDFSYDNMGMNVTPPGQPA 234
T+ ++ P +TT+ F +DN + + P PA
Sbjct: 18 TSEISKKPRPNTTVGFQFDNRNVGTSAPSTPA 49
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 120 RVSWRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPL-----RRTN 174
RV++ + ++ + N + + N +++ +P +E + + E + D L RR
Sbjct: 1000 RVAYHFKSKRLE---NALSSFKNQISNQSPMSEEIQADADAFGESKGSDELQSRILRRKK 1056
Query: 175 QPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTTLDFS 219
+ ++ + D + TPKT S+++S + T L S
Sbjct: 1057 MMASKNSSDSDSDSEDNFLASLTPKTNSSSISIENLPRKTKLSTS 1101
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 170 LRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDN 222
L+R + + + +TR+ S +Q + +I+ + R P+++ + Y+N
Sbjct: 553 LQRFQEEMENRMNQTRSESSTPAQQSAAGSSINVDTAGRQPSDEINIPGEYEN 605
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 156 PKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTT 215
P P K E+ + LRR + + +L + + T KT+ L+N ED
Sbjct: 800 PFPTYKSELDDETVLRRVKRMQTIIELARYVREQNNISLKTPLKTLIVILTNEEYLEDAK 859
Query: 216 LDFSYDNMGMNV 227
L Y +NV
Sbjct: 860 LLERYIAEELNV 871
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 154 PKPKPELKLEIRNPDPLRR-TNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAE 212
P P L + +P P + +N+ ++E+ + S ++ P+T T+++NR P++
Sbjct: 477 PSSNPN-NLLLNDPSPASTPVAKTINLNEIESVHNAESVSTLSSIPRTEQTSVANRIPSK 535
Query: 213 DTTL 216
L
Sbjct: 536 TAAL 539
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 154 PKPKPELKLEIRNPDPL---RRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHP 210
PK + +++ IR P + TN+ N+K +T +S+SDK L+ ++P
Sbjct: 1098 PKMESQIEHAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDKKSSRRRKNEKRRKLNEQNP 1157
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.6
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 128 QKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPE-LKLEIRNPDPLRRTN----QPLNVKDL 182
QK Q R+K++ + TH + + KP LEI P R N L +K L
Sbjct: 94 QKIQQYVVRLKRWMSQ-THVDAFFDYLLNKPNPYYLEIPETQPQVRCNVNVTDDLVIKSL 152
Query: 183 ETRT-SQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNMGMNVTPP 230
S D + + + ST+ SN + +LD + N+G VT P
Sbjct: 153 RAGLMSHPDVNSSSISTMRTSTSPSNWIHSASASLDDNTHNLGSFVTNP 201
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.6
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 128 QKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRR-----TNQPLNVKDL 182
QK +PA V+ + + H E K ++ + +P++R N + +++
Sbjct: 911 QKPEPALKPVEGTADPKSTKRNHQETEKTADT---DVSSTEPVKRQKTADVNDDVGEEEV 967
Query: 183 ETRTS-QSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDN 222
+ S Q D +Q + PK+ S S ++DT+ D + +N
Sbjct: 968 KQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTEN 1008
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 164 IRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRHPAEDTTLDFSYDNM 223
++ P+ + P V +L ++ +DK Q TP ST ++ +E +TL+ Y+N
Sbjct: 94 LKGPERTSEVSLPQTV-NLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLN-HYNNG 151
Query: 224 GMNVTPP 230
V P
Sbjct: 152 SHQVLHP 158
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 151 AEAPKPKPELK-LEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRH 209
A+ + KP +K + + P R + N+K L T T+ S+ SQ + KT+ ++
Sbjct: 63 AKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKY 122
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 156 PKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSN 207
P L+ + +P P RR+ P+ + + S S + +S+A SN
Sbjct: 527 PPSPLQNTVISPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSN 578
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,121,627
Number of Sequences: 5004
Number of extensions: 45252
Number of successful extensions: 127
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 17
length of query: 239
length of database: 2,362,478
effective HSP length: 71
effective length of query: 168
effective length of database: 2,007,194
effective search space: 337208592
effective search space used: 337208592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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