GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000488-TA|BGIBMGA000488-PA|undefined
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1522 + 27651983-27652690                                         30   1.4  
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608...    30   1.9  
02_05_0930 - 32801737-32801936,32802038-32802107                       29   3.3  
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    29   4.4  
02_01_0189 - 1273313-1274157,1274595-1275549                           28   5.8  
08_02_1271 - 25762750-25764276                                         28   7.7  
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648     28   7.7  
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669...    28   7.7  

>08_02_1522 + 27651983-27652690
          Length = 235

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 11 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQGYL 70
          A ++S  +T++ I  G L    D YCS E   C P N VC+        G    EC   L
Sbjct: 27 ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83

Query: 71 LDL 73
          LD+
Sbjct: 84 LDM 86


>07_01_0784 +
           6083477-6083653,6086052-6086238,6086672-6086844,
           6087520-6087678,6088677-6088817,6088880-6088941,
           6089120-6089255,6091142-6091236,6091333-6091448,
           6091538-6091667,6091757-6091811,6091889-6091930,
           6092534-6092656
          Length = 531

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 151 AEAPKPKPELKLEIRNPDPLRRTNQPLN---VKDLETRTSQSDKSQGATTPKT--ISTAL 205
           A AP+P P    ++    P+R  N+ LN   ++ L+  +SQS+   G    ++  + T+ 
Sbjct: 37  AAAPQPPPRAAADVVAASPVRSQNEDLNKPLLEILDDHSSQSNTFPGNVVGESSKVQTSR 96

Query: 206 SNRHPAEDTTLDFSYDNMGMNVTPPG 231
           S+  P      D        + TP G
Sbjct: 97  SDTSPRSHGISDSGRTYPADSCTPQG 122


>02_05_0930 - 32801737-32801936,32802038-32802107
          Length = 89

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 40 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 67
          T +   C  V N+ +   DSGLCV  CQ
Sbjct: 27 TAQLETCTEVINREYPTCDSGLCVANCQ 54


>05_05_0005 +
           21442819-21442916,21443053-21443119,21443226-21443291,
           21443368-21443414,21443480-21443543,21443627-21443707,
           21443781-21443823,21443912-21443961,21444262-21444343,
           21445045-21445120,21445451-21445558,21445782-21445833,
           21445911-21446570,21446652-21448067
          Length = 969

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 146 HHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQ 193
           HH   ++ PK   ++   +R    LR  N P++   ++  ++ S+K+Q
Sbjct: 403 HHRGESKQPKIIEKIMTTLREESRLRENNSPVSSSGVKLTSAVSNKNQ 450


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 7   VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 48
           VL +AG     +  DG    G  +C  D +CSPE    C P  V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585


>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 7   VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 45
           VL +AG     +  +G    G  +C  DE+CSPE    C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487


>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
          Length = 857

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 131 QPAKNRVKQ---YPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQ 175
           Q A  RV+    YP   +      + P+P P  +  +R P P ++ NQ
Sbjct: 542 QGANQRVRYTNPYPGGSSSQQQQQQQPRPAPRPQFVVRVPQPQQQQNQ 589


>02_05_0561 -
           29965968-29966326,29966375-29966414,29966877-29966951,
           29967003-29967107,29967453-29967592,29967691-29967775
          Length = 267

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 27  QLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 67
           +  C  +EY + E+N CA         +  Y  GL   EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,474,752
Number of Sequences: 37544
Number of extensions: 303543
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 9
length of query: 239
length of database: 14,793,348
effective HSP length: 80
effective length of query: 159
effective length of database: 11,789,828
effective search space: 1874582652
effective search space used: 1874582652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)