GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000488-TA|BGIBMGA000488-PA|undefined
         (239 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   5.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.6  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 125 YLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV 179
           Y+ Q  +P   R+++ P     +N     P+P+P      R P+     N+P+ +
Sbjct: 105 YIPQP-RPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYI 158


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 121 VSWRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLN 178
           +++R    + Q  +  V+ Y       +     P P   L L   +PD LRR  Q +N
Sbjct: 284 IAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGADDPDSLRRKRQKIN 341


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 145 THHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTIS 202
           +HH+ H      +    L   NPD  +R  +  N K L    +  D+     +P  +S
Sbjct: 72  SHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSFLS 129


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,279
Number of Sequences: 429
Number of extensions: 3619
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 140,377
effective HSP length: 56
effective length of query: 183
effective length of database: 116,353
effective search space: 21292599
effective search space used: 21292599
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)