Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000487-TA|BGIBMGA000487-PA|undefined
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    60   5e-12

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 60.1 bits (139), Expect = 5e-12
 Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 1    MEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTL--------XXXXXXXXX 52
            + EVL +D   + N  QP LVN+QLGQLYLDL++EG   +L L                 
Sbjct: 1020 LNEVLQADMNALKNFNQPLLVNDQLGQLYLDLEVEGFETKLVLEDGITSSGSDSGSSNGS 1079

Query: 53   XXXXXXXXXKRKR---EYSKLVMIYEENA 78
                     K+KR   +Y KLVMI+EENA
Sbjct: 1080 WTAGTVSQQKQKRRMVKYGKLVMIHEENA 1108


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.123    0.304 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070
Number of Sequences: 429
Number of extensions: 439
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.8 bits)
S2: 38 (19.4 bits)