GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000487-TA|BGIBMGA000487-PA|undefined
         (99 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7Z0C9 Cluster: Period protein; n=1; Danaus plexippus|R...    90   7e-18
UniRef50_UPI0000D56403 Cluster: PREDICTED: similar to CG2647-PA;...    62   3e-09
UniRef50_Q9NDF3 Cluster: Period clock protein; n=17; Aculeata|Re...    60   9e-09
UniRef50_UPI00015B6014 Cluster: PREDICTED: similar to Period alp...    47   7e-05
UniRef50_Q72ZR9 Cluster: DNA recombinase, putative; n=1; Bacillu...    31   4.6  

>UniRef50_Q7Z0C9 Cluster: Period protein; n=1; Danaus plexippus|Rep:
            Period protein - Danaus plexippus (Monarch)
          Length = 1056

 Score = 90.2 bits (214), Expect = 7e-18
 Identities = 48/83 (57%), Positives = 56/83 (67%), Gaps = 5/83 (6%)

Query: 1    MEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTL-----XXXXXXXXXXXX 55
            +EEVLS DK+K+  LEQP LV++QLGQLYLDLQL+GVAARLTL                 
Sbjct: 960  LEEVLSEDKKKLETLEQPLLVSQQLGQLYLDLQLQGVAARLTLEEGITSSSSSGEENSSM 1019

Query: 56   XXXXXXKRKREYSKLVMIYEENA 78
                  +RKREYSKLVMIYEE+A
Sbjct: 1020 SSKKIRRRKREYSKLVMIYEEDA 1042


>UniRef50_UPI0000D56403 Cluster: PREDICTED: similar to CG2647-PA; n=1;
            Tribolium castaneum|Rep: PREDICTED: similar to CG2647-PA
            - Tribolium castaneum
          Length = 1150

 Score = 61.7 bits (143), Expect = 3e-09
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 1    MEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTLXXXXXXXXXXXXXXXXX 60
            ++++L +D   +  ++QP LVN+QL QLY++++LEG++ +LTL                 
Sbjct: 1062 LDDILEADLHTLKKIDQPMLVNDQLNQLYIEMELEGLSTKLTLEEGITSSSSGDEISTNS 1121

Query: 61   XKRKREYSK---LVMIYEENA 78
             K+K+  S+   ++M YEENA
Sbjct: 1122 SKKKKRRSQSAVMMMFYEENA 1142


>UniRef50_Q9NDF3 Cluster: Period clock protein; n=17; Aculeata|Rep:
            Period clock protein - Apis mellifera (Honeybee)
          Length = 1124

 Score = 60.1 bits (139), Expect = 9e-09
 Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 1    MEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTL--------XXXXXXXXX 52
            + EVL +D   + N  QP LVN+QLGQLYLDL++EG   +L L                 
Sbjct: 1020 LNEVLQADMNALKNFNQPLLVNDQLGQLYLDLEVEGFETKLVLEDGITSSGSDSGSSNGS 1079

Query: 53   XXXXXXXXXKRKR---EYSKLVMIYEENA 78
                     K+KR   +Y KLVMI+EENA
Sbjct: 1080 WTAGTVSQQKQKRRMVKYGKLVMIHEENA 1108


>UniRef50_UPI00015B6014 Cluster: PREDICTED: similar to Period alpha;
            n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
            Period alpha - Nasonia vitripennis
          Length = 1137

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 19/43 (44%), Positives = 33/43 (76%)

Query: 1    MEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTL 43
            ++E+L +D   +   +QP+LVNEQLGQL+ DL+++G+ ++L L
Sbjct: 1047 LDEILKADLDFLRRSKQPNLVNEQLGQLFHDLEIQGLGSKLLL 1089


>UniRef50_Q72ZR9 Cluster: DNA recombinase, putative; n=1; Bacillus
           cereus ATCC 10987|Rep: DNA recombinase, putative -
           Bacillus cereus (strain ATCC 10987)
          Length = 487

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 9   KQKISNLEQPSLVNEQLGQLYLDLQLEGV 37
           K+KI  L+Q   VNEQ  Q  LDL LEG+
Sbjct: 377 KEKIKKLQQLMNVNEQKKQSLLDLYLEGL 405


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.306    0.123    0.304 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,979,198
Number of Sequences: 1657284
Number of extensions: 1195736
Number of successful extensions: 1615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 575,637,011
effective HSP length: 76
effective length of query: 23
effective length of database: 449,683,427
effective search space: 10342718821
effective search space used: 10342718821
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 65 (30.3 bits)