GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000487-TA|BGIBMGA000487-PA|undefined
         (99 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0136 + 1069136-1069292,1070783-1071060,1071246-1071602,107...    27   1.8  
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142...    25   7.5  
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    25   9.9  

>03_01_0136 +
           1069136-1069292,1070783-1071060,1071246-1071602,
           1071706-1072119,1072221-1072302,1072429-1073093
          Length = 650

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3   EVLSSDKQKISNLEQPSLVNEQLGQLYLD 31
           EV   +K+++ NL    LVN  LG++ ++
Sbjct: 378 EVFKDEKKRVENLRGVKLVNNDLGEIVVE 406


>04_04_1548 -
           34313212-34313304,34313518-34313632,34314097-34314287,
           34314391-34315379,34315989-34316136,34316349-34316424,
           34316946-34317110,34317196-34317286,34318069-34318153,
           34318256-34318411,34318479-34318586,34318713-34318811,
           34318927-34319036,34319139-34319208
          Length = 831

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 2   EEVLSSDKQKISNLEQPSLVNEQLGQL 28
           +++++ D Q I  +  PS + +QL QL
Sbjct: 468 QQIINPDAQNIQTMLSPSAIQQQLQQL 494


>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 17  QPSLVNEQLGQLYLDLQLEGVA 38
           Q +L NEQLG+LY  ++   VA
Sbjct: 586 QGALANEQLGKLYAQVRPNAVA 607


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.123    0.304 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,815
Number of Sequences: 37544
Number of extensions: 27244
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 3
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 52 (25.0 bits)