GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000487-TA|BGIBMGA000487-PA|undefined
         (99 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   2.7  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    21   8.3  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 1   MEEVLSSDKQKISNLEQPSLVNEQLGQLYLDLQLEGVAARLTL 43
           M   L   +Q +  L+Q  L NEQ  Q    +  EG     TL
Sbjct: 742 MTRKLHQRQQHMKKLQQELLTNEQQLQQLAGVVFEGETEETTL 784


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 6   SSDKQKISNLEQPSLVNEQLGQLYLDLQLEG 36
           SSD   + +  + + V  Q+GQL  +LQ  G
Sbjct: 439 SSDAAYLEDKRKLTKVEGQIGQLERELQSTG 469


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.306    0.123    0.304 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,085
Number of Sequences: 2123
Number of extensions: 1043
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 516,269
effective HSP length: 55
effective length of query: 44
effective length of database: 399,504
effective search space: 17578176
effective search space used: 17578176
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 42 (21.0 bits)