GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000487-TA|BGIBMGA000487-PA|undefined
         (99 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.                  27   7.0  
AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.                  27   7.0  

>AF010404-1|AAC51735.1| 4957|Homo sapiens ALR protein.
          Length = 4957

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 2    EEVLSSDKQKISNLEQPSLVNEQLGQLYLDL 32
            E +LSSD  +IS  E P + ++ L QL+ D+
Sbjct: 1288 EGMLSSDLDRISTEELPKMESKDLQQLFKDV 1318


>AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.
          Length = 5262

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 2    EEVLSSDKQKISNLEQPSLVNEQLGQLYLDL 32
            E +LSSD  +IS  E P + ++ L QL+ D+
Sbjct: 1593 EGMLSSDLDRISTEELPKMESKDLQQLFKDV 1623


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.306    0.123    0.304 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,090,087
Number of Sequences: 224733
Number of extensions: 141843
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 2
length of query: 99
length of database: 73,234,838
effective HSP length: 76
effective length of query: 23
effective length of database: 56,155,130
effective search space: 1291567990
effective search space used: 1291567990
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 57 (27.1 bits)