GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000486-TA|BGIBMGA000486-PA|IPR013767|PAS fold,
IPR013655|PAS fold-3, IPR000014|PAS
         (699 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    26   0.76 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   1.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    25   1.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   1.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   4.1  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    23   7.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   7.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   7.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   9.4  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 564 PPSTNAAGNMNTFILG--VGMAPQMSLISPVPPMAGMLPLYYTPMATMAPVPSTSEAANH 621
           PPS+ ++G++  F     +  A   ++ S + P  G          ++  V  TSE +  
Sbjct: 64  PPSSTSSGSLGQFPATPVIDPAKDPAIYSNLLPRPGSND---NSWESLIEVTKTSETSKL 120

Query: 622 QNLHNNPQQYAPPPMQCVL 640
           Q L +N +     P QCV+
Sbjct: 121 QQLVDNIEHKLSDPNQCVI 139


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 236 YIKIETEWSSFINPWSKKLEFVIGKHY 262
           + ++ + W  F+N W+ K+E  + KHY
Sbjct: 109 FSQVASRWPLFLNEWT-KIEINLLKHY 134


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 236 YIKIETEWSSFINPWSKKLEFVIG 259
           +IK+ TEW   +  W  K+E ++G
Sbjct: 411 FIKLATEWPQLMKAW-LKIELLVG 433


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 584 PQMSLISPVP--PMAGMLPLYYTPMATMAPVP 613
           P  S+I P P  P AG L   Y P+  + P+P
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLPLPQVPPLP 184


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 330 ESLMEEP--PKNDEELRLEIQDPDHSYYERDSVM-LGGISPHHDYNDSKSSTETPLSYNQ 386
           E+ +E P  P+N  E  L   D D         +     SP  +  + KS  + P SYN 
Sbjct: 31  ETALEAPKSPENHPETELSDSDCDLDVTGTPPPLDCSKNSPEKESEEKKSKEKPPYSYNA 90

Query: 387 L 387
           L
Sbjct: 91  L 91


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 192 QDKDALQLYHPEDLEYLQQVYEVIVK 217
           ++ + L+ Y   DLE  ++VYE I K
Sbjct: 65  EEAETLKRYKLNDLEKRREVYESIFK 90


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 192 QDKDALQLYHPEDLEYLQQVYEVIVK 217
           ++ + L+ Y   DLE  ++VYE I K
Sbjct: 225 EEAETLKRYKLNDLEKRREVYESIFK 250


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 192 QDKDALQLYHPEDLEYLQQVYEVIVK 217
           ++ + L+ Y   DLE  ++VYE I K
Sbjct: 225 EEAETLKRYKLNDLEKRREVYESIFK 250


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 626 NNPQQYAPPPMQCVLYGQPIYGQ 648
           +NP  Y+PPP  C  +  P Y Q
Sbjct: 23  HNPA-YSPPPSYCDPWYNPYYYQ 44


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,015
Number of Sequences: 317
Number of extensions: 8061
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 9
length of query: 699
length of database: 114,650
effective HSP length: 62
effective length of query: 637
effective length of database: 94,996
effective search space: 60512452
effective search space used: 60512452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 46 (22.6 bits)